A2AIV2 (VIR_MOUSE) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 34.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Protein virilizer homolog | ||
| Gene names |
| ||
| Organism | Mus musculus (Mouse) [Reference proteome] | ||
| Taxonomic identifier | 10090 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus![]() |
Protein attributes
| Sequence length | 1811 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | May be involved in mRNA splicing regulation By similarity. |
| Subcellular location | Nucleus By similarity. |
| Sequence similarities | Belongs to the vir family. |
| Sequence caution | The sequence AAH28830.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
| Keywords | |
|---|---|
| Biological process | mRNA processing mRNA splicing |
| Cellular component | Nucleus |
| Coding sequence diversity | Alternative splicing |
| PTM | Acetylation Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | RNA splicing Inferred from electronic annotation. Source: UniProtKB-KW mRNA processingInferred from electronic annotation. Source: UniProtKB-KW |
| Cellular_component | nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Complete GO annotation... | |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: A2AIV2-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: A2AIV2-2) The sequence of this isoform differs from the canonical sequence as follows: 1131-1139: IEPHDISVA → PLHITCILS 1140-1811: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Initiator methionine | 1 | 1 | Removed By similarity | ||||||
| Chain | 2 – 1811 | 1810 | Protein virilizer homolog | PRO_0000308606 | |||||
Regions | |||||||||
| Compositional bias | 139 – 202 | 64 | Pro-rich | ||||||
| Compositional bias | 208 – 314 | 107 | Glu-rich | ||||||
| Compositional bias | 942 – 945 | 4 | Poly-Pro | ||||||
Amino acid modifications | |||||||||
| Modified residue | 2 | 1 | N-acetylalanine By similarity | ||||||
| Modified residue | 133 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 138 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 173 | 1 | Phosphoserine Ref.5 | ||||||
| Modified residue | 184 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 222 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 913 | 1 | Phosphotyrosine By similarity | ||||||
| Modified residue | 1578 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1707 | 1 | Phosphothreonine By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 1131 – 1139 | 9 | IEPHDISVA → PLHITCILS in isoform 2. | VSP_029022 | |||||
| Alternative sequence | 1140 – 1811 | 672 | Missing in isoform 2. | VSP_029023 | |||||
Experimental info | |||||||||
| Sequence conflict | 97 | 1 | S → Y in BAE41548. Ref.1 | ||||||
| Sequence conflict | 373 | 1 | K → E in BAC35017. Ref.1 | ||||||
| Sequence conflict | 1520 | 1 | A → T in AAH28830. Ref.4 | ||||||
| Sequence conflict | 1582 | 1 | S → T in AAH28830. Ref.4 | ||||||
Sequences
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References
| [1] | "The transcriptional landscape of the mammalian genome." Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. Hayashizaki Y.Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-1210 AND 1737-1811 (ISOFORM 1). Strain: C57BL/6J and NOD. Tissue: Lung and Urinary bladder. |
| [2] | "Lineage-specific biology revealed by a finished genome assembly of the mouse." Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. Ponting C.P.PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6J. |
| [3] | "Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries." Okazaki N., Kikuno R., Ohara R., Inamoto S., Aizawa H., Yuasa S., Nakajima D., Nagase T., Ohara O., Koga H. DNA Res. 10:35-48(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 5-1811 (ISOFORM 1). Tissue: Brain. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1421-1811 (ISOFORM 1). Strain: FVB/N. Tissue: Liver. |
| [5] | "The phagosomal proteome in interferon-gamma-activated macrophages." Trost M., English L., Lemieux S., Courcelles M., Desjardins M., Thibault P. Immunity 30:143-154(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-173, MASS SPECTROMETRY. Tissue: Macrophage. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AK012768 mRNA. Translation: BAB28456.1. AK052499 mRNA. Translation: BAC35017.2. AK155623 mRNA. Translation: BAE33351.1. AK162531 mRNA. Translation: BAE36958.1. AK170075 mRNA. Translation: BAE41548.1. AL732538, AL772170 Genomic DNA. Translation: CAM18405.1. AL732538, AL772170 Genomic DNA. Translation: CAM18406.1. AL772170, AL732538 Genomic DNA. Translation: CAM20819.1. AL772170, AL732538 Genomic DNA. Translation: CAM20820.1. AK122509 mRNA. Translation: BAC65791.1. BC028830 mRNA. Translation: AAH28830.1. Different initiation. |
| IPI | IPI00348445. IPI00869461. |
| UniGene | Mm.331487. |
3D structure databases | |
| ProteinModelPortal | A2AIV2. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | 10090.ENSMUSP00000103943. |
PTM databases | |
| PhosphoSite | A2AIV2. |
Proteomic databases | |
| PaxDb | A2AIV2. |
| PRIDE | A2AIV2. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENSMUST00000055372; ENSMUSP00000063188; ENSMUSG00000040720. ENSMUST00000059914; ENSMUSP00000058078; ENSMUSG00000040720. |
| UCSC | uc008rzo.1. mouse. uc008rzp.1. mouse. |
Organism-specific databases | |
| MGI | MGI:1913435. 1110037F02Rik. |
| Rouge | Search... |
Phylogenomic databases | |
| eggNOG | NOG322397. |
| GeneTree | ENSGT00390000002833. |
| HOVERGEN | HBG094918. |
| OrthoDB | EOG4D52WT. |
Gene expression databases | |
| ArrayExpress | A2AIV2. |
| Bgee | A2AIV2. |
| CleanEx | MM_1110037F02RIK. |
| Genevestigator | A2AIV2. |
Family and domain databases | |
| InterPro | IPR026736. Virilizer. [Graphical view] |
| PANTHER | PTHR23185. PTHR23185. 1 hit. |
| ProtoNet | Search... |
Other | |
| SOURCE | Search... |
Entry information
| Entry name | VIR_MOUSE | ||||||||
| Accession | Primary (citable) accession number: A2AIV2 Secondary accession number(s): A2AIV1 Q9CSI3 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
Relevant documents
| MGD cross-references Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
