A2AGL3 (RYR3_MOUSE) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 49.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Ryanodine receptor 3 Short name=RYR-3 Short name=RyR3 Alternative name(s): Brain ryanodine receptor-calcium release channel Brain-type ryanodine receptor Type 3 ryanodine receptor | ||
| Gene names |
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| Organism | Mus musculus (Mouse) [Reference proteome] | ||
| Taxonomic identifier | 10090 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus![]() |
Protein attributes
| Sequence length | 4863 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Calcium channel that mediates the release of Ca2+ from the sarcoplasmic reticulum into the cytoplasm in muscle and thereby plays a role in triggering muscle contraction. May regulate Ca2+ release by other calcium channels. Calcium channel that mediates Ca2+-induced Ca2+ release from the endoplasmic reticulum in non-muscle cells. Plays a role in cellular calcium signaling. Contributes to cellular calcium ion homeostasis. Isoform 2 lacks a predicted transmembrane segment and does not form functional calcium channels by itself; however, it can form tetramers with isoforms that contain the full complement of transmembrane segments and modulate their activity. Ref.2 Ref.7 Ref.8 Ref.9 Ref.10 Ref.11 |
| Subunit structure | Homotetramer. Isoform 2 can form tetramers with isoform 1. Heterotetramer with RYR2. Interacts with FKBP1A. Interacts with CALM By similarity. Ref.6 |
| Subcellular location | Sarcoplasmic reticulum membrane; Multi-pass membrane protein Probable. Membrane; Multi-pass membrane protein. Microsome membrane; Multi-pass membrane protein By similarity. Note: The number of predicted transmembrane domains varies between orthologs, but both N-terminus and C-terminus seem to be cytoplasmic By similarity. Ref.8 |
| Tissue specificity | Detected in hippocampus, cerebellum, striatum, frontal brain cortex and parietal brain cortex. Detected in skeletal muscle, diaphragm muscle and myometrium (at protein level). Detected in egg cells. Detected in heart, diaphragm, stomach, spleen, ovary, testis germ cells, brain and cerebellum. Detected in cerebral artery smooth muscle cells. Ref.5 Ref.6 Ref.7 Ref.8 Ref.9 Ref.11 |
| Domain | The calcium release channel activity resides in the C-terminal region while the remaining part of the protein resides in the cytoplasm Probable. |
| Disruption phenotype | No apparent phenotype. Mice are born at the expected Mendelian rate and are fertile. They appear normal, except for increased locomotor activity and decreased social contact duration in social interaction tests. Ref.2 Ref.12 |
| Miscellaneous | Channel activity is modulated by the alkaloid ryanodine that binds to the open calcium-release channel with high affinity. At low concentrations, ryanodine maintains the channel in an open conformation. High ryanodine concentrations inhibit channel activity. Channel activity is regulated by calmodulin (CALM). The calcium release is activated by elevated cytoplasmic calcium levels in the micromolar range, by caffeine and adenine nucleotides, such as AMP and ATP. Inhibited by Mg2+ and ruthenium red. |
| Sequence similarities | Belongs to the ryanodine receptor (TC 1.A.3.1) family. RYR3 subfamily. [View classification] Contains 3 B30.2/SPRY domains. Contains 5 MIR domains. |
Ontologies
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: A2AGL3-1) Also known as: RYR3L; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: A2AGL3-2) Also known as: RYR3S; The sequence of this isoform differs from the canonical sequence as follows: 4397-4425: Missing. | ||||||
| Note: Lacks a predicted transmembrane segment and is not expected to form functional calcium channels. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 4863 | 4863 | Ryanodine receptor 3 | PRO_0000415648 | |||||
Regions | |||||||||
| Topological domain | 1 – 4179 | 4179 | Cytoplasmic Potential | ||||||
| Transmembrane | 4180 – 4200 | 21 | Helical; Potential | ||||||
| Transmembrane | 4403 – 4423 | 21 | Helical; Potential | ||||||
| Transmembrane | 4478 – 4498 | 21 | Helical; Potential | ||||||
| Transmembrane | 4603 – 4623 | 21 | Helical; Potential | ||||||
| Transmembrane | 4626 – 4646 | 21 | Helical; Potential | ||||||
| Transmembrane | 4665 – 4685 | 21 | Helical; Potential | ||||||
| Intramembrane | 4716 – 4725 | 10 | Pore-forming; By similarity | ||||||
| Transmembrane | 4746 – 4766 | 21 | Helical; Potential | ||||||
| Topological domain | 4767 – 4863 | 97 | Cytoplasmic Potential | ||||||
| Domain | 100 – 155 | 56 | MIR 1 | ||||||
| Domain | 162 – 207 | 46 | MIR 2 | ||||||
| Domain | 215 – 269 | 55 | MIR 3 | ||||||
| Domain | 275 – 333 | 59 | MIR 4 | ||||||
| Domain | 343 – 400 | 58 | MIR 5 | ||||||
| Domain | 585 – 796 | 212 | B30.2/SPRY 1 | ||||||
| Repeat | 840 – 953 | 114 | 1 | ||||||
| Repeat | 954 – 1068 | 115 | 2 | ||||||
| Domain | 1012 – 1208 | 197 | B30.2/SPRY 2 | ||||||
| Domain | 1254 – 1466 | 213 | B30.2/SPRY 3 | ||||||
| Repeat | 2587 – 2705 | 119 | 3 | ||||||
| Repeat | 2706 – 2818 | 113 | 4 | ||||||
| Region | 840 – 2818 | 1979 | 4 X approximate repeats | ||||||
| Region | 2320 – 2333 | 14 | Interaction with FKBP1A By similarity | ||||||
| Region | 3462 – 3491 | 30 | Interaction with CALM By similarity | ||||||
Sites | |||||||||
| Site | 3876 | 1 | Important for activation by Ca(2+) By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 4397 – 4425 | 29 | Missing in isoform 2. | VSP_042304 | |||||
Experimental info | |||||||||
| Sequence conflict | 4169 | 1 | S → I in AAF21940. Ref.3 | ||||||
| Sequence conflict | 4214 | 1 | E → Q in AAF21940. Ref.3 | ||||||
| Sequence conflict | 4427 | 1 | T → A in AAF21940. Ref.3 | ||||||
| Sequence conflict | 4450 | 1 | E → V in BAE21181. Ref.4 | ||||||
| Sequence conflict | 4457 | 1 | F → L in CAA58786. Ref.5 | ||||||
| Sequence conflict | 4469 | 1 | T → N in CAA58786. Ref.5 | ||||||
| Sequence conflict | 4602 | 1 | H → N in AAA64957. Ref.6 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Lineage-specific biology revealed by a finished genome assembly of the mouse." Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. Ponting C.P.PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6J. |
| [2] | "Generation and characterization of mutant mice lacking ryanodine receptor type 3." Takeshima H., Ikemoto T., Nishi M., Nishiyama N., Shimuta M., Sugitani Y., Kuno J., Saito I., Saito H., Endo M., Iino M., Noda T. J. Biol. Chem. 271:19649-19652(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 1-67, FUNCTION, DISRUPTION PHENOTYPE. Tissue: Brain. |
| [3] | "Calcium-induced calcium release dependent on ryanodine receptor type 3 (RyR3) modulates both neuronal excitability and transmitter release." Chameau P., Van de Vrede Y., Lucas-Meunier E., Fossier P., Denizot J.-P., Shimahara T., Tauc L., Baux G. Submitted (DEC-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 4088-4541 (ISOFORM 1). Strain: Swiss. Tissue: Brain. |
| [4] | "The transcriptional landscape of the mammalian genome." Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. Hayashizaki Y.Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 4220-4863 (ISOFORM 2). Strain: C57BL/6J. Tissue: Skin. |
| [5] | "The ryanodine receptor/calcium channel genes are widely and differentially expressed in murine brain and peripheral tissues." Giannini G., Conti A., Mammarella S., Scrobogna M., Sorrentino V. J. Cell Biol. 128:893-904(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 4405-4692 (ISOFORM 1), TISSUE SPECIFICITY. Strain: BALB/c. Tissue: Brain. |
| [6] | "Regulation of mouse egg activation: presence of ryanodine receptors and effects of microinjected ryanodine and cyclic ADP ribose on uninseminated and inseminated eggs." Ayabe T., Kopf G.S., Schultz R.M. Development 121:2233-2244(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 4598-4841, SUBUNIT, TISSUE SPECIFICITY. Tissue: Egg. |
| [7] | "Ca(2+)-induced Ca2+ release in myocytes from dyspedic mice lacking the type-1 ryanodine receptor." Takeshima H., Yamazawa T., Ikemoto T., Takekura H., Nishi M., Noda T., Iino M. EMBO J. 14:2999-3006(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 4741-4863, FUNCTION, TISSUE SPECIFICITY. Strain: C57BL/6J. Tissue: Brain. |
| [8] | "Functional properties of the ryanodine receptor type 3 (RyR3) Ca2+ release channel." Sonnleitner A., Conti A., Bertocchini F., Schindler H., Sorrentino V. EMBO J. 17:2790-2798(1998) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY. |
| [9] | "Regulation of calcium sparks and spontaneous transient outward currents by RyR3 in arterial vascular smooth muscle cells." Lohn M., Jessner W., Furstenau M., Wellner M., Sorrentino V., Haller H., Luft F.C., Gollasch M. Circ. Res. 89:1051-1057(2001) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, TISSUE SPECIFICITY. |
| [10] | "RyR3 amplifies RyR1-mediated Ca(2+)-induced Ca(2+) release in neonatal mammalian skeletal muscle." Yang D., Pan Z., Takeshima H., Wu C., Nagaraj R.Y., Ma J., Cheng H. J. Biol. Chem. 276:40210-40214(2001) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [11] | "Role of RYR3 splice variants in calcium signaling in mouse nonpregnant and pregnant myometrium." Dabertrand F., Fritz N., Mironneau J., Macrez N., Morel J.L. Am. J. Physiol. 293:C848-C854(2007) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, CHARACTERIZATION OF ISOFORM 2, ALTERNATIVE SPLICING, TISSUE SPECIFICITY. |
| [12] | "Comprehensive behavioral phenotyping of ryanodine receptor type 3 (RyR3) knockout mice: decreased social contact duration in two social interaction tests." Matsuo N., Tanda K., Nakanishi K., Yamasaki N., Toyama K., Takao K., Takeshima H., Miyakawa T. Front. Behav. Neurosci. 3:3-3(2009) [PubMed] [Europe PMC] [Abstract] Cited for: DISRUPTION PHENOTYPE. |
| [13] | "Ryanodine receptor studies using genetically engineered mice." Kushnir A., Betzenhauser M.J., Marks A.R. FEBS Lett. 584:1956-1965(2010) [PubMed] [Europe PMC] [Abstract] Cited for: REVIEW. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AL929348 Genomic DNA. No translation available. AL672250 BX649564 Genomic DNA. Translation: CAM15357.1.AL691423 BX649564 Genomic DNA. Translation: CAM17843.1.AL732316 BX649564 Genomic DNA. Translation: CAM22353.1.BX649564 AL732316 Genomic DNA. Translation: CAM23489.1.D84237 mRNA. Translation: BAA12286.1. AF111166 mRNA. Translation: AAF21940.1. AK132464 mRNA. Translation: BAE21181.1. X83934 mRNA. Translation: CAA58786.1. U23756 mRNA. Translation: AAA64957.1. D38218 mRNA. Translation: BAA07393.1. |
| IPI | IPI00404991. IPI00606638. |
| PIR | I48743. S56107. |
| UniGene | Mm.436657. |
3D structure databases | |
| ProteinModelPortal | A2AGL3. |
| SMR | A2AGL3. Positions 13-530, 2596-2798, 3462-3488. |
| ModBase | Search... |
Proteomic databases | |
| PaxDb | A2AGL3. |
| PRIDE | A2AGL3. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENSMUST00000080673; ENSMUSP00000079503; ENSMUSG00000057378. |
| UCSC | uc008lpg.1. mouse. |
Organism-specific databases | |
| MGI | MGI:99684. Ryr3. |
Phylogenomic databases | |
| eggNOG | NOG247670. |
| GeneTree | ENSGT00690000101961. |
| HOGENOM | HOG000231428. |
| HOVERGEN | HBG006699. |
| OrthoDB | EOG4548XN. |
Gene expression databases | |
| ArrayExpress | A2AGL3. |
| Bgee | A2AGL3. |
| Genevestigator | A2AGL3. |
Family and domain databases | |
| Gene3D | 1.10.238.10. 1 hit. |
| InterPro | IPR001870. B30.2/SPRY. IPR000699. Ca-rel_channel. IPR008985. ConA-like_lec_gl_sf. IPR011992. EF-hand-like_dom. IPR002048. EF_hand_dom. IPR014821. Ins145_P3_rcpt. IPR005821. Ion_trans_dom. IPR016093. MIR_motif. IPR013662. RIH_assoc-dom. IPR013333. Ryan_recept. IPR003032. Ryanodine_rcpt. IPR015925. Ryanodine_recept-rel. IPR009460. Ryanrecept_TM4-6. IPR018355. SPla/RYanodine_receptor_subgr. IPR003877. SPRY_rcpt. [Graphical view] |
| PANTHER | PTHR13715. PTHR13715. 1 hit. |
| Pfam | PF08709. Ins145_P3_rec. 1 hit. PF00520. Ion_trans. 1 hit. PF02815. MIR. 1 hit. PF08454. RIH_assoc. 1 hit. PF06459. RR_TM4-6. 1 hit. PF01365. RYDR_ITPR. 2 hits. PF02026. RyR. 4 hits. PF00622. SPRY. 3 hits. [Graphical view] |
| PRINTS | PR00795. RYANODINER. |
| SMART | SM00472. MIR. 4 hits. SM00449. SPRY. 3 hits. [Graphical view] |
| SUPFAM | SSF49899. ConA_like_lec_gl. 3 hits. SSF82109. MIR. 1 hit. |
| PROSITE | PS50188. B302_SPRY. 3 hits. PS50919. MIR. 5 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChEMBL | CHEMBL2365. |
| ChiTaRS | RYR3. mouse. |
| SOURCE | Search... |
Entry information
| Entry name | RYR3_MOUSE | ||||||||
| Accession | Primary (citable) accession number: A2AGL3 Secondary accession number(s): P70184 Q9QY91 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
Relevant documents
| MGD cross-references Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
