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Protein
Submitted name:

Chloride channel protein ClC-Ka

Gene

Clcnka

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Chloride channel protein ClC-KaImported
Gene namesi
Name:ClcnkaImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 4

Organism-specific databases

MGIiMGI:1329026. Clcnka.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei50 – 71HelicalSequence analysisAdd BLAST22
Transmembranei91 – 110HelicalSequence analysisAdd BLAST20

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PaxDbiA2ADB4.

Expressioni

Gene expression databases

BgeeiENSMUSG00000033770.
ExpressionAtlasiA2ADB4. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000048520.

Structurei

3D structure databases

ProteinModelPortaliA2ADB4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG0476. Eukaryota.
COG0038. LUCA.
GeneTreeiENSGT00760000119109.

Family and domain databases

Gene3Di1.10.3080.10. 1 hit.
InterProiIPR014743. Cl-channel_core.
IPR001807. Cl-channel_volt-gated.
IPR002250. Cl_channel-K.
[Graphical view]
PfamiPF00654. Voltage_CLC. 1 hit.
[Graphical view]
PRINTSiPR00762. CLCHANNEL.
PR01119. CLCHANNELKDY.
SUPFAMiSSF81340. SSF81340. 1 hit.

Sequencei

Sequence statusi: Fragment.

A2ADB4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEELVGLREG SSGKPVTLQE LWGPCPRIRR GIRGGLEWLK ERLFRAREDW
60 70 80 90 100
YFLVALGVLM ALISYAMNFA IGRVVRAHKW LYREVGDGHL LRYLSWTVYP
110 120 130 140 150
VALLSFSSGF SQSITPFSGG SGLPELKTML SGVVLENYLD IKNFGAKVVG
160 170 180 190
LSCTLATGST IFLGKVGPFV HLSVMISAYL GRVRAKAVGD TE
Length:192
Mass (Da):21,173
Last modified:February 20, 2007 - v1
Checksum:iE15C561170D076C5
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei192Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL670285 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSMUST00000133676; ENSMUSP00000122396; ENSMUSG00000033770.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL670285 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortaliA2ADB4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000048520.

Proteomic databases

PaxDbiA2ADB4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000133676; ENSMUSP00000122396; ENSMUSG00000033770.

Organism-specific databases

MGIiMGI:1329026. Clcnka.

Phylogenomic databases

eggNOGiKOG0476. Eukaryota.
COG0038. LUCA.
GeneTreeiENSGT00760000119109.

Miscellaneous databases

SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000033770.
ExpressionAtlasiA2ADB4. baseline and differential.

Family and domain databases

Gene3Di1.10.3080.10. 1 hit.
InterProiIPR014743. Cl-channel_core.
IPR001807. Cl-channel_volt-gated.
IPR002250. Cl_channel-K.
[Graphical view]
PfamiPF00654. Voltage_CLC. 1 hit.
[Graphical view]
PRINTSiPR00762. CLCHANNEL.
PR01119. CLCHANNELKDY.
SUPFAMiSSF81340. SSF81340. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiA2ADB4_MOUSE
AccessioniPrimary (citable) accession number: A2ADB4
Entry historyi
Integrated into UniProtKB/TrEMBL: February 20, 2007
Last sequence update: February 20, 2007
Last modified: November 30, 2016
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.