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Protein
Submitted name:

Procollagen, type IX, alpha 3

Gene

Col9a3

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

  1. female gonad development Source: UniProtKB
  2. male gonad development Source: UniProtKB
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_280178. Signaling by PDGF.
REACT_285754. Collagen biosynthesis and modifying enzymes.
REACT_313067. Collagen degradation.
REACT_319054. NCAM1 interactions.
REACT_319261. Integrin cell surface interactions.

Names & Taxonomyi

Protein namesi
Submitted name:
Procollagen, type IX, alpha 3Imported
Submitted name:
Protein Col9a3Imported
Gene namesi
Name:Col9a3Imported
ORF Names:mCG_140084Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589 Componenti: Chromosome 2

Organism-specific databases

MGIiMGI:894686. Col9a3.

Subcellular locationi

GO - Cellular componenti

  1. collagen type IX trimer Source: MGI
Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiA2ACT7.
PRIDEiA2ACT7.

Expressioni

Gene expression databases

BgeeiA2ACT7.
ExpressionAtlasiA2ACT7. baseline and differential.

Family & Domainsi

Keywords - Domaini

CollagenImported

Phylogenomic databases

eggNOGiNOG297550.
GeneTreeiENSGT00780000121854.
HOGENOMiHOG000085653.
HOVERGENiHBG004933.
InParanoidiA2ACT7.
KOiK08131.
OMAiQKVGPQG.
OrthoDBiEOG7J180G.
PhylomeDBiA2ACT7.

Family and domain databases

InterProiIPR008160. Collagen.
[Graphical view]
PfamiPF01391. Collagen. 9 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A2ACT7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTGAPALALL LLGQLLTATS AQKVGPRGPP GPQGPPGKPG KDGIDGEAGP
60 70 80 90 100
PGLPGLPGPK GTSGKPGKPG EAGLPGLPGV DGLTGRDGPA GPKGAPGERG
110 120 130 140 150
SLGPPGPPGL GGKGLPGPPG EAGVSGLPGG IGLRGPPGPS GLPGLPGLPG
160 170 180 190 200
PPGPPGNPGV LPEGATDLQC PAICPPGPPG PPGMPGFKGP TGYKGEQGEV
210 220 230 240 250
GKDGEKGSPG PPGPPGIPGT VGLQGPRGLR GLPGPLGPPG DRGPIGFRGP
260 270 280 290 300
PGTPGAPGKV GDRGERGPEG FRGPKGDLGR PGPKGIPGMA GPGGEPGMPG
310 320 330 340 350
KDGKDGVPGL DGEKGEAGRN GGQGEKGPNG LPGLPGRAGS KGEKGEPGRT
360 370 380 390 400
GELGEAGPSG EPGIPGDVGV PGERGEAGHR GSVGALGPQG PPGAPGIRGF
410 420 430 440 450
QGQKGSTGDP GLPGPQGLRG DVGDRGPGGA TGPKGDQGIA GSDGLPGDKG
460 470 480 490 500
ELGPNGPVGQ KGESGSRGEL GPKGIQGPNG TSGVQGVPGP PGPLGLQGVQ
510 520 530 540 550
GVPGITGKPG VPGKEASEQR IRELCGGMIS EQIAQLAAHL RKPLAPGSIG
560 570 580 590 600
RPGPAGPPGP PGPPGSIGHP GARGPPGYRG PTGELGDPGP RGSQGDRGDK
610 620 630 640 650
GATGAGLDGP AGDQGYQGPQ GVPGISKDGR DGAHGEPGLP GDPGLPGAAG
660 670 680
AQGTPGICDT SACQGAVLGG GGEKSGPRSS
Length:680
Mass (Da):63,475
Last modified:February 20, 2007 - v1
Checksum:iE898FA049A4D9D2E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL669926 Genomic DNA. No translation available.
CH466626 Genomic DNA. Translation: EDL07344.1.
RefSeqiNP_034066.2. NM_009936.2.
XP_006500615.1. XM_006500552.2.
UniGeneiMm.141312.

Genome annotation databases

EnsembliENSMUST00000103059; ENSMUSP00000099348; ENSMUSG00000027570.
ENSMUST00000132527; ENSMUSP00000128718; ENSMUSG00000027570.
GeneIDi12841.
KEGGimmu:12841.
UCSCiuc008ojl.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL669926 Genomic DNA. No translation available.
CH466626 Genomic DNA. Translation: EDL07344.1.
RefSeqiNP_034066.2. NM_009936.2.
XP_006500615.1. XM_006500552.2.
UniGeneiMm.141312.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiA2ACT7.
PRIDEiA2ACT7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000103059; ENSMUSP00000099348; ENSMUSG00000027570.
ENSMUST00000132527; ENSMUSP00000128718; ENSMUSG00000027570.
GeneIDi12841.
KEGGimmu:12841.
UCSCiuc008ojl.1. mouse.

Organism-specific databases

CTDi1299.
MGIiMGI:894686. Col9a3.

Phylogenomic databases

eggNOGiNOG297550.
GeneTreeiENSGT00780000121854.
HOGENOMiHOG000085653.
HOVERGENiHBG004933.
InParanoidiA2ACT7.
KOiK08131.
OMAiQKVGPQG.
OrthoDBiEOG7J180G.
PhylomeDBiA2ACT7.

Enzyme and pathway databases

ReactomeiREACT_280178. Signaling by PDGF.
REACT_285754. Collagen biosynthesis and modifying enzymes.
REACT_313067. Collagen degradation.
REACT_319054. NCAM1 interactions.
REACT_319261. Integrin cell surface interactions.

Miscellaneous databases

NextBioi282372.
PROiA2ACT7.
SOURCEiSearch...

Gene expression databases

BgeeiA2ACT7.
ExpressionAtlasiA2ACT7. baseline and differential.

Family and domain databases

InterProiIPR008160. Collagen.
[Graphical view]
PfamiPF01391. Collagen. 9 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
    Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.
    , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
    Science 296:1661-1671(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  2. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
    Submitted (JUN-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  4. Ensembl
    Submitted (JAN-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiA2ACT7_MOUSE
AccessioniPrimary (citable) accession number: A2ACT7
Entry historyi
Integrated into UniProtKB/TrEMBL: February 20, 2007
Last sequence update: February 20, 2007
Last modified: April 1, 2015
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.