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A2A934

- A2A934_MOUSE

UniProt

A2A934 - A2A934_MOUSE

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Protein
Submitted name:

PR domain zinc finger protein 16

Gene
Prdm16
Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. metal ion binding Source: InterPro
  2. nucleic acid binding Source: InterPro
  3. SMAD binding Source: MGI

GO - Biological processi

  1. negative regulation of transforming growth factor beta receptor signaling pathway Source: MGI
  2. neurogenesis Source: MGI
  3. palate development Source: MGI
  4. somatic stem cell maintenance Source: MGI
  5. tongue development Source: MGI
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
PR domain zinc finger protein 16Imported
Gene namesi
Name:Prdm16Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 4

Organism-specific databases

MGIiMGI:1917923. Prdm16.

PTM / Processingi

Proteomic databases

PRIDEiA2A934.

Structurei

3D structure databases

ProteinModelPortaliA2A934.
SMRiA2A934. Positions 66-496, 948-1058.

Family & Domainsi

Sequence similaritiesi

Contains 1 SET domain.UniRule annotation

Phylogenomic databases

GeneTreeiENSGT00530000063676.
HOGENOMiHOG000231144.
HOVERGENiHBG005619.

Family and domain databases

Gene3Di3.30.160.60. 8 hits.
InterProiIPR001214. SET_dom.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 4 hits.
[Graphical view]
SMARTiSM00317. SET. 1 hit.
SM00355. ZnF_C2H2. 10 hits.
[Graphical view]
PROSITEiPS50280. SET. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 8 hits.
PS50157. ZINC_FINGER_C2H2_2. 10 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A2A934-1 [UniParc]FASTAAdd to Basket

« Hide

MRSKARARKL AKSDGDVVNN MYEPDPDLLA GQSAEEETED GILSPIPMGP     50
PSPFPTSEDF TPKEGSPYEA PVYIPEDIPI PPDFELRESS IPGAGLGIWA 100
KRKMEIGERF GPYVVTPRAA LKEADFGWEQ MLTDTEVSSQ ESCIKKQISE 150
DLGSEKFCVD ANQAGSGSWL KYIRVACSCD DQNLAMCQIN EQIYYKVIKD 200
IEPGEELLVH VKEGAYSLGV MAPSLDEDPT FRCDECDELF QCRLDLRRHK 250
KYACSSAGAQ LYEGLGEELK PEGLGVGSDG QAHECKDCER MFPNKYSLEQ 300
HMIVHTEERE YKCDQCPKAF NWKSNLIRHQ MSHDSGKRFE CENCVKVFTD 350
PSNLQRHIRS QHVGARAHAC PDCGKTFATS SGLKQHKHIH STVKPFICEV 400
CHKSYTQFSN LCRHKRMHAD CRTQIKCKDC GQMFSTTSSL NKHRRFCEGK 450
NHYTPGSIFT PGLPLTPSPM MDKTKPSPTL NHGGLGFSEY FPSRPHPGSL 500
PFSAAPPAFP ALTPGFPGIF PPSLYPRPPL LPPTPLLKSP LNHAQDAKLP 550
SPLGNPALPL VSAVSNSSQG ATAATGSEEK FDGRLEDAYA EKVKNRSPDM 600
SDGSDFEDIN TTTGTDLDTT TGTGSDLDSD LDSDRDKGKD KGKPVESKPE 650
FGGASVPPGA MNSVAEVPAF YSQHSFFPPP EEQLLTASGA AGDSIKAIAS 700
IAEKYFGPGF MSMQEKKLGS LPYHSVFPFQ FLPNFPHSLY PFTDRALAHN 750
LLVKAEPKSP RDALKVGGPS AECPFDLTTK PKEAKPALLA PKVPLIPSSG 800
EEQPLDLSIG SRARASQNGG GREPRKNHVY GERKPGVSEG LPKVCPAQLP 850
QQPSLHYAKP SPFFMDPIYR VEKRKVADPV GVLKEKYLRP SPLLFHPQMS 900
AIETMTEKLE SFAAMKADSG SSLQPLPHHP FNFRSPPPTL SDPILRKGKE 950
RYTCRYCGKI FPRSANLTRH LRTHTGEQPY RCKYCDRSFS ISSNLQRHVR 1000
NIHNKEKPFK CHLCNRCFGQ QTNLDRHLKK HEHEGAPVSQ HSGVLTNHLG 1050
TSASSPTSES DNHALLDEKE DSYFSEIRNF IANSEMNQAS TRMDKRPEIQ 1100
DLDSNPPCPG SASAKPEDVE EEEEEELEEE DDDSLAGKSQ EDTVSPTPEP 1150
QGVYEDEEDE EPPSLTMGFD HTRRHMQ 1177
Length:1,177
Mass (Da):130,340
Last modified:February 5, 2008 - v1
Checksum:iFFBC17FCD168C29F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL611950 Genomic DNA. No translation available.
AL627123 Genomic DNA. No translation available.
AL627127 Genomic DNA. No translation available.
AL627226 Genomic DNA. No translation available.
RefSeqiNP_001171466.1. NM_001177995.1.
UniGeneiMm.257785.

Genome annotation databases

EnsembliENSMUST00000105636; ENSMUSP00000101261; ENSMUSG00000039410.
GeneIDi70673.
KEGGimmu:70673.
UCSCiuc008wbw.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL611950 Genomic DNA. No translation available.
AL627123 Genomic DNA. No translation available.
AL627127 Genomic DNA. No translation available.
AL627226 Genomic DNA. No translation available.
RefSeqi NP_001171466.1. NM_001177995.1.
UniGenei Mm.257785.

3D structure databases

ProteinModelPortali A2A934.
SMRi A2A934. Positions 66-496, 948-1058.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi A2A934.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000105636 ; ENSMUSP00000101261 ; ENSMUSG00000039410 .
GeneIDi 70673.
KEGGi mmu:70673.
UCSCi uc008wbw.1. mouse.

Organism-specific databases

CTDi 63976.
MGIi MGI:1917923. Prdm16.

Phylogenomic databases

GeneTreei ENSGT00530000063676.
HOGENOMi HOG000231144.
HOVERGENi HBG005619.

Miscellaneous databases

ChiTaRSi PRDM16. mouse.
NextBioi 332055.
SOURCEi Search...

Family and domain databases

Gene3Di 3.30.160.60. 8 hits.
InterProi IPR001214. SET_dom.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view ]
Pfami PF00096. zf-C2H2. 4 hits.
[Graphical view ]
SMARTi SM00317. SET. 1 hit.
SM00355. ZnF_C2H2. 10 hits.
[Graphical view ]
PROSITEi PS50280. SET. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 8 hits.
PS50157. ZINC_FINGER_C2H2_2. 10 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  2. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiA2A934_MOUSE
AccessioniPrimary (citable) accession number: A2A934
Entry historyi
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: June 11, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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