PR domain zinc finger protein 16 - Mus musculus (Mouse)

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A2A934 (A2A934_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 47. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
PR domain zinc finger protein 16 Ensembl ENSMUSP00000101261

Gene names

Name:

Prdm16 Ensembl ENSMUSP00000101261 MGI 1917923

Organism

Mus musculus (Mouse) [Reference proteome] Ensembl ENSMUSP00000101261

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	1177 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSMUSP00000101261

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	negative regulation of transforming growth factor beta receptor signaling pathway Inferred from mutant phenotype PubMed 20007998. Source: MGI neurogenesis Inferred from direct assay PubMed 19050759. Source: MGI palate development Inferred from mutant phenotype PubMed 20007998. Source: MGI somatic stem cell maintenance Inferred from direct assay PubMed 19379700. Source: MGI tongue development Inferred from mutant phenotype PubMed 20007998. Source: MGI
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	nucleic acid binding Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

A2A934 [UniParc].

Last modified February 5, 2008. Version 1.
Checksum: FFBC17FCD168C29F
Show »

FASTA

1,177

130,340

        10         20         30         40         50         60 
MRSKARARKL AKSDGDVVNN MYEPDPDLLA GQSAEEETED GILSPIPMGP PSPFPTSEDF 

        70         80         90        100        110        120 
TPKEGSPYEA PVYIPEDIPI PPDFELRESS IPGAGLGIWA KRKMEIGERF GPYVVTPRAA 

       130        140        150        160        170        180 
LKEADFGWEQ MLTDTEVSSQ ESCIKKQISE DLGSEKFCVD ANQAGSGSWL KYIRVACSCD 

       190        200        210        220        230        240 
DQNLAMCQIN EQIYYKVIKD IEPGEELLVH VKEGAYSLGV MAPSLDEDPT FRCDECDELF 

       250        260        270        280        290        300 
QCRLDLRRHK KYACSSAGAQ LYEGLGEELK PEGLGVGSDG QAHECKDCER MFPNKYSLEQ 

       310        320        330        340        350        360 
HMIVHTEERE YKCDQCPKAF NWKSNLIRHQ MSHDSGKRFE CENCVKVFTD PSNLQRHIRS 

       370        380        390        400        410        420 
QHVGARAHAC PDCGKTFATS SGLKQHKHIH STVKPFICEV CHKSYTQFSN LCRHKRMHAD 

       430        440        450        460        470        480 
CRTQIKCKDC GQMFSTTSSL NKHRRFCEGK NHYTPGSIFT PGLPLTPSPM MDKTKPSPTL 

       490        500        510        520        530        540 
NHGGLGFSEY FPSRPHPGSL PFSAAPPAFP ALTPGFPGIF PPSLYPRPPL LPPTPLLKSP 

       550        560        570        580        590        600 
LNHAQDAKLP SPLGNPALPL VSAVSNSSQG ATAATGSEEK FDGRLEDAYA EKVKNRSPDM 

       610        620        630        640        650        660 
SDGSDFEDIN TTTGTDLDTT TGTGSDLDSD LDSDRDKGKD KGKPVESKPE FGGASVPPGA 

       670        680        690        700        710        720 
MNSVAEVPAF YSQHSFFPPP EEQLLTASGA AGDSIKAIAS IAEKYFGPGF MSMQEKKLGS 

       730        740        750        760        770        780 
LPYHSVFPFQ FLPNFPHSLY PFTDRALAHN LLVKAEPKSP RDALKVGGPS AECPFDLTTK 

       790        800        810        820        830        840 
PKEAKPALLA PKVPLIPSSG EEQPLDLSIG SRARASQNGG GREPRKNHVY GERKPGVSEG 

       850        860        870        880        890        900 
LPKVCPAQLP QQPSLHYAKP SPFFMDPIYR VEKRKVADPV GVLKEKYLRP SPLLFHPQMS 

       910        920        930        940        950        960 
AIETMTEKLE SFAAMKADSG SSLQPLPHHP FNFRSPPPTL SDPILRKGKE RYTCRYCGKI 

       970        980        990       1000       1010       1020 
FPRSANLTRH LRTHTGEQPY RCKYCDRSFS ISSNLQRHVR NIHNKEKPFK CHLCNRCFGQ 

      1030       1040       1050       1060       1070       1080 
QTNLDRHLKK HEHEGAPVSQ HSGVLTNHLG TSASSPTSES DNHALLDEKE DSYFSEIRNF 

      1090       1100       1110       1120       1130       1140 
IANSEMNQAS TRMDKRPEIQ DLDSNPPCPG SASAKPEDVE EEEEEELEEE DDDSLAGKSQ 

      1150       1160       1170 
EDTVSPTPEP QGVYEDEEDE EPPSLTMGFD HTRRHMQ

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Lineage-specific biology revealed by a finished genome assembly of the mouse." Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. Ponting C.P. PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6J Ensembl ENSMUSP00000101261.
[2]	Ensembl Submitted (FEB-2012) to UniProtKB Cited for: IDENTIFICATION. Strain: C57BL/6J Ensembl ENSMUSP00000101261.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AL611950 Genomic DNA. No translation available. AL627123 Genomic DNA. No translation available. AL627127 Genomic DNA. No translation available. AL627226 Genomic DNA. No translation available.
IPI	IPI00649130.
RefSeq	NP_001171466.1. NM_001177995.1.
UniGene	Mm.257785.
3D structure databases
ProteinModelPortal	A2A934.
SMR	A2A934. Positions 74-209, 281-445, 948-1058.
ModBase	Search...
Proteomic databases
PRIDE	A2A934.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSMUST00000105636; ENSMUSP00000101261; ENSMUSG00000039410.
GeneID	70673.
KEGG	mmu:70673.
UCSC	uc008wbw.1. mouse.
Organism-specific databases
CTD	63976.
MGI	MGI:1917923. Prdm16.
Phylogenomic databases
GeneTree	ENSGT00530000063676.
HOGENOM	HOG000231144.
HOVERGEN	HBG005619.
Gene expression databases
ArrayExpress	A2A934.
Family and domain databases
Gene3D	3.30.160.60. 8 hits.
InterPro	IPR001214. SET_dom. IPR007087. Znf_C2H2. IPR015880. Znf_C2H2-like. IPR013087. Znf_C2H2/integrase_DNA-bd. [Graphical view]
Pfam	PF00096. zf-C2H2. 4 hits. [Graphical view]
SMART	SM00317. SET. 1 hit. SM00355. ZnF_C2H2. 10 hits. [Graphical view]
PROSITE	PS50280. SET. 1 hit. PS00028. ZINC_FINGER_C2H2_1. 8 hits. PS50157. ZINC_FINGER_C2H2_2. 10 hits. [Graphical view]
ProtoNet	Search...
Other
ChiTaRS	PRDM16. mouse.
NextBio	332055.
SOURCE	Search...

Entry information

Entry name

A2A934_MOUSE

Accession

Primary (citable) accession number: A2A934

Entry history

Integrated into UniProtKB/TrEMBL:	February 5, 2008
Last sequence update:	February 5, 2008
Last modified:	May 1, 2013
This is version 47 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequences

References

Cross-references

Sequence databases

3D structure databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Gene expression databases

Family and domain databases

Other

Entry information