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Protein
Submitted name:

PR domain zinc finger protein 16

Gene

Prdm16

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
PR domain zinc finger protein 16Imported
Gene namesi
Name:Prdm16Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 4

Organism-specific databases

MGIiMGI:1917923 Prdm16

PTM / Processingi

Proteomic databases

MaxQBiA2A934

Expressioni

Gene expression databases

BgeeiENSMUSG00000039410
ExpressionAtlasiA2A934 baseline and differential
GenevisibleiA2A934 MM

Structurei

3D structure databases

ProteinModelPortaliA2A934
SMRiA2A934
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini82 – 212SETInterPro annotationAdd BLAST131
Domaini231 – 261C2H2-typeInterPro annotationAdd BLAST31
Domaini283 – 310C2H2-typeInterPro annotationAdd BLAST28
Domaini311 – 338C2H2-typeInterPro annotationAdd BLAST28
Domaini339 – 367C2H2-typeInterPro annotationAdd BLAST29
Domaini368 – 395C2H2-typeInterPro annotationAdd BLAST28
Domaini396 – 423C2H2-typeInterPro annotationAdd BLAST28
Domaini425 – 452C2H2-typeInterPro annotationAdd BLAST28
Domaini952 – 979C2H2-typeInterPro annotationAdd BLAST28
Domaini980 – 1008C2H2-typeInterPro annotationAdd BLAST29
Domaini1009 – 1036C2H2-typeInterPro annotationAdd BLAST28

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00900000140928
HOGENOMiHOG000231144
HOVERGENiHBG005619

Family and domain databases

InterProiView protein in InterPro
IPR030414 PRDM16
IPR001214 SET_dom
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PANTHERiPTHR24393:SF5 PTHR24393:SF5, 1 hit
SMARTiView protein in SMART
SM00317 SET, 1 hit
SM00355 ZnF_C2H2, 10 hits
SUPFAMiSSF57667 SSF57667, 5 hits
PROSITEiView protein in PROSITE
PS50280 SET, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 8 hits
PS50157 ZINC_FINGER_C2H2_2, 10 hits

Sequencei

Sequence statusi: Complete.

A2A934-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRSKARARKL AKSDGDVVNN MYEPDPDLLA GQSAEEETED GILSPIPMGP
60 70 80 90 100
PSPFPTSEDF TPKEGSPYEA PVYIPEDIPI PPDFELRESS IPGAGLGIWA
110 120 130 140 150
KRKMEIGERF GPYVVTPRAA LKEADFGWEQ MLTDTEVSSQ ESCIKKQISE
160 170 180 190 200
DLGSEKFCVD ANQAGSGSWL KYIRVACSCD DQNLAMCQIN EQIYYKVIKD
210 220 230 240 250
IEPGEELLVH VKEGAYSLGV MAPSLDEDPT FRCDECDELF QCRLDLRRHK
260 270 280 290 300
KYACSSAGAQ LYEGLGEELK PEGLGVGSDG QAHECKDCER MFPNKYSLEQ
310 320 330 340 350
HMIVHTEERE YKCDQCPKAF NWKSNLIRHQ MSHDSGKRFE CENCVKVFTD
360 370 380 390 400
PSNLQRHIRS QHVGARAHAC PDCGKTFATS SGLKQHKHIH STVKPFICEV
410 420 430 440 450
CHKSYTQFSN LCRHKRMHAD CRTQIKCKDC GQMFSTTSSL NKHRRFCEGK
460 470 480 490 500
NHYTPGSIFT PGLPLTPSPM MDKTKPSPTL NHGGLGFSEY FPSRPHPGSL
510 520 530 540 550
PFSAAPPAFP ALTPGFPGIF PPSLYPRPPL LPPTPLLKSP LNHAQDAKLP
560 570 580 590 600
SPLGNPALPL VSAVSNSSQG ATAATGSEEK FDGRLEDAYA EKVKNRSPDM
610 620 630 640 650
SDGSDFEDIN TTTGTDLDTT TGTGSDLDSD LDSDRDKGKD KGKPVESKPE
660 670 680 690 700
FGGASVPPGA MNSVAEVPAF YSQHSFFPPP EEQLLTASGA AGDSIKAIAS
710 720 730 740 750
IAEKYFGPGF MSMQEKKLGS LPYHSVFPFQ FLPNFPHSLY PFTDRALAHN
760 770 780 790 800
LLVKAEPKSP RDALKVGGPS AECPFDLTTK PKEAKPALLA PKVPLIPSSG
810 820 830 840 850
EEQPLDLSIG SRARASQNGG GREPRKNHVY GERKPGVSEG LPKVCPAQLP
860 870 880 890 900
QQPSLHYAKP SPFFMDPIYR VEKRKVADPV GVLKEKYLRP SPLLFHPQMS
910 920 930 940 950
AIETMTEKLE SFAAMKADSG SSLQPLPHHP FNFRSPPPTL SDPILRKGKE
960 970 980 990 1000
RYTCRYCGKI FPRSANLTRH LRTHTGEQPY RCKYCDRSFS ISSNLQRHVR
1010 1020 1030 1040 1050
NIHNKEKPFK CHLCNRCFGQ QTNLDRHLKK HEHEGAPVSQ HSGVLTNHLG
1060 1070 1080 1090 1100
TSASSPTSES DNHALLDEKE DSYFSEIRNF IANSEMNQAS TRMDKRPEIQ
1110 1120 1130 1140 1150
DLDSNPPCPG SASAKPEDVE EEEEEELEEE DDDSLAGKSQ EDTVSPTPEP
1160 1170
QGVYEDEEDE EPPSLTMGFD HTRRHMQ
Length:1,177
Mass (Da):130,340
Last modified:February 5, 2008 - v1
Checksum:iFFBC17FCD168C29F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL611950 Genomic DNA No translation available.
AL627123 Genomic DNA No translation available.
AL627127 Genomic DNA No translation available.
AL627226 Genomic DNA No translation available.
RefSeqiNP_001171466.1, NM_001177995.1
UniGeneiMm.257785

Genome annotation databases

EnsembliENSMUST00000105636; ENSMUSP00000101261; ENSMUSG00000039410
GeneIDi70673
UCSCiuc008wbw.1 mouse

Similar proteinsi

Entry informationi

Entry nameiA2A934_MOUSE
AccessioniPrimary (citable) accession number: A2A934
Entry historyiIntegrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: March 28, 2018
This is version 86 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
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Main funding by: National Institutes of Health