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A2A930

- A2A930_MOUSE

UniProt

A2A930 - A2A930_MOUSE

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Protein
Submitted name:

PR domain zinc finger protein 16

Gene

Prdm16

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. metal ion binding Source: InterPro
  2. nucleic acid binding Source: InterPro
  3. SMAD binding Source: MGI

GO - Biological processi

  1. negative regulation of transforming growth factor beta receptor signaling pathway Source: MGI
  2. neurogenesis Source: MGI
  3. palate development Source: MGI
  4. somatic stem cell maintenance Source: MGI
  5. tongue development Source: MGI
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
PR domain zinc finger protein 16Imported
Gene namesi
Name:Prdm16Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 4

Organism-specific databases

MGIiMGI:1917923. Prdm16.

PTM / Processingi

Proteomic databases

PRIDEiA2A930.

Expressioni

Gene expression databases

ExpressionAtlasiA2A930. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000101263.

Structurei

3D structure databases

ProteinModelPortaliA2A930.
SMRiA2A930. Positions 74-208, 280-444, 948-1058.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 SET domain.UniRule annotation

Phylogenomic databases

GeneTreeiENSGT00530000063676.
HOGENOMiHOG000231144.
HOVERGENiHBG005619.

Family and domain databases

Gene3Di3.30.160.60. 8 hits.
InterProiIPR001214. SET_dom.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 4 hits.
[Graphical view]
SMARTiSM00317. SET. 1 hit.
SM00355. ZnF_C2H2. 10 hits.
[Graphical view]
PROSITEiPS50280. SET. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 8 hits.
PS50157. ZINC_FINGER_C2H2_2. 10 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A2A930-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRSKARARKL AKSDGDVVNN MYEPDPDLLA GQSAEEETED GILSPIPMGP
60 70 80 90 100
PSPFPTSEDF TPKEGSPYEA PVYIPEDIPI PPDFELRESS IPGAGLGIWA
110 120 130 140 150
KRKMEIGERF GPYVVTPRAA LKEADFGWEQ MLTDTEVSSQ ESCIKKISED
160 170 180 190 200
LGSEKFCVDA NQAGSGSWLK YIRVACSCDD QNLAMCQINE QIYYKVIKDI
210 220 230 240 250
EPGEELLVHV KEGAYSLGVM APSLDEDPTF RCDECDELFQ CRLDLRRHKK
260 270 280 290 300
YACSSAGAQL YEGLGEELKP EGLGVGSDGQ AHECKDCERM FPNKYSLEQH
310 320 330 340 350
MIVHTEEREY KCDQCPKAFN WKSNLIRHQM SHDSGKRFEC ENCVKVFTDP
360 370 380 390 400
SNLQRHIRSQ HVGARAHACP DCGKTFATSS GLKQHKHIHS TVKPFICEVC
410 420 430 440 450
HKSYTQFSNL CRHKRMHADC RTQIKCKDCG QMFSTTSSLN KHRRFCEGKN
460 470 480 490 500
HYTPGSIFTP GLPLTPSPMM DKTKPSPTLN HGGLGFSEYF PSRPHPGSLP
510 520 530 540 550
FSAAPPAFPA LTPGFPGIFP PSLYPRPPLL PPTPLLKSPL NHAQDAKLPS
560 570 580 590 600
PLGNPALPLV SAVSNSSQGA TAATGSEEKF DGRLEDAYAE KVKNRSPDMS
610 620 630 640 650
DGSDFEDINT TTGTDLDTTT GTGSDLDSDL DSDRDKGKDK GKPVESKPEF
660 670 680 690 700
GGASVPPGAM NSVAEVPAFY SQHSFFPPPE EQLLTASGAA GDSIKAIASI
710 720 730 740 750
AEKYFGPGFM SMQEKKLGSL PYHSVFPFQF LPNFPHSLYP FTDRALAHNL
760 770 780 790 800
LVKAEPKSPR DALKVGGPSA ECPFDLTTKP KEAKPALLAP KVPLIPSSGE
810 820 830 840 850
EQPLDLSIGS RARASQNGGG REPRKNHVYG ERKPGVSEGL PKVCPAQLPQ
860 870 880 890 900
QPSLHYAKPS PFFMDPIYSR VEKRKVADPV GVLKEKYLRP SPLLFHPQMS
910 920 930 940 950
AIETMTEKLE SFAAMKADSG SSLQPLPHHP FNFRSPPPTL SDPILRKGKE
960 970 980 990 1000
RYTCRYCGKI FPRSANLTRH LRTHTGEQPY RCKYCDRSFS ISSNLQRHVR
1010 1020 1030 1040 1050
NIHNKEKPFK CHLCNRCFGQ QTNLDRHLKK HEHEGAPVSQ HSGVLTNHLG
1060 1070 1080 1090 1100
TSASSPTSES DNHALLDEKE DSYFSEIRNF IANSEMNQAS TRMDKRPEIQ
1110 1120 1130 1140 1150
DLDSNPPCPG SASAKPEDVE EEEEEELEEE DDDSLAGKSQ EDTVSPTPEP
1160 1170 1180 1190 1200
QGVYEDEEDE EPPSLTMGFD HTRRCVEERG GGLLALEPTP TFGKGLDLRR
1210 1220 1230 1240 1250
AAEEAFEVKD VLNSTLDSEV LKQTLYRQAK NQSSLDAWLN ITGPSSESGA

FNPINHL
Length:1,257
Mass (Da):138,901
Last modified:February 5, 2008 - v1
Checksum:i97D4EB555E9FE886
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL611950 Genomic DNA. No translation available.
AL627123 Genomic DNA. No translation available.
AL627127 Genomic DNA. No translation available.
AL627226 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSMUST00000097759; ENSMUSP00000095365; ENSMUSG00000039410.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL611950 Genomic DNA. No translation available.
AL627123 Genomic DNA. No translation available.
AL627127 Genomic DNA. No translation available.
AL627226 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortali A2A930.
SMRi A2A930. Positions 74-208, 280-444, 948-1058.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10090.ENSMUSP00000101263.

Proteomic databases

PRIDEi A2A930.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000097759 ; ENSMUSP00000095365 ; ENSMUSG00000039410 .

Organism-specific databases

MGIi MGI:1917923. Prdm16.

Phylogenomic databases

GeneTreei ENSGT00530000063676.
HOGENOMi HOG000231144.
HOVERGENi HBG005619.

Miscellaneous databases

ChiTaRSi PRDM16. mouse.
NextBioi 35542852.
SOURCEi Search...

Gene expression databases

ExpressionAtlasi A2A930. baseline and differential.

Family and domain databases

Gene3Di 3.30.160.60. 8 hits.
InterProi IPR001214. SET_dom.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view ]
Pfami PF00096. zf-C2H2. 4 hits.
[Graphical view ]
SMARTi SM00317. SET. 1 hit.
SM00355. ZnF_C2H2. 10 hits.
[Graphical view ]
PROSITEi PS50280. SET. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 8 hits.
PS50157. ZINC_FINGER_C2H2_2. 10 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  2. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiA2A930_MOUSE
AccessioniPrimary (citable) accession number: A2A930
Entry historyi
Integrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: October 29, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3