Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

A2A930

- A2A930_MOUSE

UniProt

A2A930 - A2A930_MOUSE

Protein
Submitted name:

PR domain zinc finger protein 16

Gene

Prdm16

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 53 (01 Oct 2014)
      Sequence version 1 (05 Feb 2008)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. metal ion binding Source: InterPro
    2. nucleic acid binding Source: InterPro
    3. SMAD binding Source: MGI

    GO - Biological processi

    1. negative regulation of transforming growth factor beta receptor signaling pathway Source: MGI
    2. neurogenesis Source: MGI
    3. palate development Source: MGI
    4. somatic stem cell maintenance Source: MGI
    5. tongue development Source: MGI

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    PR domain zinc finger protein 16Imported
    Gene namesi
    Name:Prdm16Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 4

    Organism-specific databases

    MGIiMGI:1917923. Prdm16.

    PTM / Processingi

    Proteomic databases

    PRIDEiA2A930.

    Interactioni

    Protein-protein interaction databases

    STRINGi10090.ENSMUSP00000101263.

    Structurei

    3D structure databases

    ProteinModelPortaliA2A930.
    SMRiA2A930. Positions 24-210, 280-444, 948-1058.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 SET domain.UniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00530000063676.
    HOGENOMiHOG000231144.
    HOVERGENiHBG005619.

    Family and domain databases

    Gene3Di3.30.160.60. 8 hits.
    InterProiIPR001214. SET_dom.
    IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    [Graphical view]
    PfamiPF00096. zf-C2H2. 4 hits.
    [Graphical view]
    SMARTiSM00317. SET. 1 hit.
    SM00355. ZnF_C2H2. 10 hits.
    [Graphical view]
    PROSITEiPS50280. SET. 1 hit.
    PS00028. ZINC_FINGER_C2H2_1. 8 hits.
    PS50157. ZINC_FINGER_C2H2_2. 10 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A2A930-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRSKARARKL AKSDGDVVNN MYEPDPDLLA GQSAEEETED GILSPIPMGP     50
    PSPFPTSEDF TPKEGSPYEA PVYIPEDIPI PPDFELRESS IPGAGLGIWA 100
    KRKMEIGERF GPYVVTPRAA LKEADFGWEQ MLTDTEVSSQ ESCIKKISED 150
    LGSEKFCVDA NQAGSGSWLK YIRVACSCDD QNLAMCQINE QIYYKVIKDI 200
    EPGEELLVHV KEGAYSLGVM APSLDEDPTF RCDECDELFQ CRLDLRRHKK 250
    YACSSAGAQL YEGLGEELKP EGLGVGSDGQ AHECKDCERM FPNKYSLEQH 300
    MIVHTEEREY KCDQCPKAFN WKSNLIRHQM SHDSGKRFEC ENCVKVFTDP 350
    SNLQRHIRSQ HVGARAHACP DCGKTFATSS GLKQHKHIHS TVKPFICEVC 400
    HKSYTQFSNL CRHKRMHADC RTQIKCKDCG QMFSTTSSLN KHRRFCEGKN 450
    HYTPGSIFTP GLPLTPSPMM DKTKPSPTLN HGGLGFSEYF PSRPHPGSLP 500
    FSAAPPAFPA LTPGFPGIFP PSLYPRPPLL PPTPLLKSPL NHAQDAKLPS 550
    PLGNPALPLV SAVSNSSQGA TAATGSEEKF DGRLEDAYAE KVKNRSPDMS 600
    DGSDFEDINT TTGTDLDTTT GTGSDLDSDL DSDRDKGKDK GKPVESKPEF 650
    GGASVPPGAM NSVAEVPAFY SQHSFFPPPE EQLLTASGAA GDSIKAIASI 700
    AEKYFGPGFM SMQEKKLGSL PYHSVFPFQF LPNFPHSLYP FTDRALAHNL 750
    LVKAEPKSPR DALKVGGPSA ECPFDLTTKP KEAKPALLAP KVPLIPSSGE 800
    EQPLDLSIGS RARASQNGGG REPRKNHVYG ERKPGVSEGL PKVCPAQLPQ 850
    QPSLHYAKPS PFFMDPIYSR VEKRKVADPV GVLKEKYLRP SPLLFHPQMS 900
    AIETMTEKLE SFAAMKADSG SSLQPLPHHP FNFRSPPPTL SDPILRKGKE 950
    RYTCRYCGKI FPRSANLTRH LRTHTGEQPY RCKYCDRSFS ISSNLQRHVR 1000
    NIHNKEKPFK CHLCNRCFGQ QTNLDRHLKK HEHEGAPVSQ HSGVLTNHLG 1050
    TSASSPTSES DNHALLDEKE DSYFSEIRNF IANSEMNQAS TRMDKRPEIQ 1100
    DLDSNPPCPG SASAKPEDVE EEEEEELEEE DDDSLAGKSQ EDTVSPTPEP 1150
    QGVYEDEEDE EPPSLTMGFD HTRRCVEERG GGLLALEPTP TFGKGLDLRR 1200
    AAEEAFEVKD VLNSTLDSEV LKQTLYRQAK NQSSLDAWLN ITGPSSESGA 1250
    FNPINHL 1257
    Length:1,257
    Mass (Da):138,901
    Last modified:February 5, 2008 - v1
    Checksum:i97D4EB555E9FE886
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL611950 Genomic DNA. No translation available.
    AL627123 Genomic DNA. No translation available.
    AL627127 Genomic DNA. No translation available.
    AL627226 Genomic DNA. No translation available.

    Genome annotation databases

    EnsembliENSMUST00000097759; ENSMUSP00000095365; ENSMUSG00000039410.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL611950 Genomic DNA. No translation available.
    AL627123 Genomic DNA. No translation available.
    AL627127 Genomic DNA. No translation available.
    AL627226 Genomic DNA. No translation available.

    3D structure databases

    ProteinModelPortali A2A930.
    SMRi A2A930. Positions 24-210, 280-444, 948-1058.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10090.ENSMUSP00000101263.

    Proteomic databases

    PRIDEi A2A930.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000097759 ; ENSMUSP00000095365 ; ENSMUSG00000039410 .

    Organism-specific databases

    MGIi MGI:1917923. Prdm16.

    Phylogenomic databases

    GeneTreei ENSGT00530000063676.
    HOGENOMi HOG000231144.
    HOVERGENi HBG005619.

    Miscellaneous databases

    ChiTaRSi PRDM16. mouse.
    NextBioi 35542852.
    SOURCEi Search...

    Family and domain databases

    Gene3Di 3.30.160.60. 8 hits.
    InterProi IPR001214. SET_dom.
    IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    [Graphical view ]
    Pfami PF00096. zf-C2H2. 4 hits.
    [Graphical view ]
    SMARTi SM00317. SET. 1 hit.
    SM00355. ZnF_C2H2. 10 hits.
    [Graphical view ]
    PROSITEi PS50280. SET. 1 hit.
    PS00028. ZINC_FINGER_C2H2_1. 8 hits.
    PS50157. ZINC_FINGER_C2H2_2. 10 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    2. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiA2A930_MOUSE
    AccessioniPrimary (citable) accession number: A2A930
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 5, 2008
    Last sequence update: February 5, 2008
    Last modified: October 1, 2014
    This is version 53 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3