A2A929 (A2A929_MOUSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
PR domain zinc finger protein 16 Ensembl ENSMUSP00000117598

Gene names

Name:

Prdm16 Ensembl ENSMUSP00000117598 MGI 1917923

Organism

Mus musculus (Mouse) [Reference proteome] Ensembl ENSMUSP00000117598

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	214 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSMUSP00000117598

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	negative regulation of transforming growth factor beta receptor signaling pathway Inferred from mutant phenotype PubMed 20007998. Source: MGI neurogenesis Inferred from direct assay PubMed 19050759. Source: MGI palate development Inferred from mutant phenotype PubMed 20007998. Source: MGI somatic stem cell maintenance Inferred from direct assay PubMed 19379700. Source: MGI tongue development Inferred from mutant phenotype PubMed 20007998. Source: MGI
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	214	1	Ensembl ENSMUSP00000117598

Sequences

	Sequence		Length	Mass (Da)
	A2A929 [UniParc]. Last modified February 5, 2008. Version 1. Checksum: D533826A2D227E3A	FASTA	214	23,655
	10 20 30 40 50 60 MRSKARARKL AKSDGDVVNN MYEPDPDLLA GQSAEEETED GILSPIPMGP PSPFPTSEDF 70 80 90 100 110 120 TPKEGSPYEA PVYIPEDIPI PPDFELRESS IPGAGLGIWA KRKMEIGERF GPYVVTPRAA 130 140 150 160 170 180 LKEADFGWEM LTDTEVSSQE SCIKKISEDL GSEKFCVDAN QAGSGSWLKY IRVACSCDDQ 190 200 210 NLAMCQINEQ IYYKVIKDIE PGEELLVHVK EGAY

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Lineage-specific biology revealed by a finished genome assembly of the mouse." Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P. PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6J Ensembl ENSMUSP00000117598.
[2]	Ensembl Submitted (FEB-2012) to UniProtKB Cited for: IDENTIFICATION. Strain: C57BL/6J Ensembl ENSMUSP00000117598.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AL611950 Genomic DNA. No translation available. AL627123 Genomic DNA. No translation available. AL627127 Genomic DNA. No translation available. AL627226 Genomic DNA. No translation available.
IPI	IPI00649803.
UniGene	Mm.257785.
3D structure databases
ProteinModelPortal	A2A929.
SMR	A2A929. Positions 27-212.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSMUST00000124771; ENSMUSP00000117598; ENSMUSG00000039410.
Organism-specific databases
MGI	MGI:1917923. Prdm16.
Phylogenomic databases
GeneTree	ENSGT00530000063676.
HOVERGEN	HBG031707.
Gene expression databases
ArrayExpress	A2A929.
Family and domain databases
InterPro	IPR001214. SET_dom. [Graphical view]
Pfam	PF00856. SET. 1 hit. [Graphical view]
SMART	SM00317. SET. 1 hit. [Graphical view]
PROSITE	PS50280. SET. 1 hit. [Graphical view]
ProtoNet	Search...
Other
ChiTaRS	PRDM16. mouse.
NextBio	35542851.
SOURCE	Search...

Entry information

Entry name

A2A929_MOUSE

Accession

Primary (citable) accession number: A2A929

Entry history

Integrated into UniProtKB/TrEMBL:	February 5, 2008
Last sequence update:	February 5, 2008
Last modified:	April 3, 2013
This is version 41 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)