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A2A929

- A2A929_MOUSE

UniProt

A2A929 - A2A929_MOUSE

Protein
Submitted name:

PR domain zinc finger protein 16

Gene

Prdm16

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 50 (01 Oct 2014)
      Sequence version 1 (05 Feb 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. SMAD binding Source: MGI

    GO - Biological processi

    1. negative regulation of transforming growth factor beta receptor signaling pathway Source: MGI
    2. neurogenesis Source: MGI
    3. palate development Source: MGI
    4. somatic stem cell maintenance Source: MGI
    5. tongue development Source: MGI

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    PR domain zinc finger protein 16Imported
    Gene namesi
    Name:Prdm16Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 4

    Organism-specific databases

    MGIiMGI:1917923. Prdm16.

    Structurei

    3D structure databases

    ProteinModelPortaliA2A929.
    SMRiA2A929. Positions 27-212.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 SET domain.UniRule annotation
    Contains SET domain.SAAS annotation

    Phylogenomic databases

    GeneTreeiENSGT00530000063676.
    HOVERGENiHBG031707.

    Family and domain databases

    InterProiIPR001214. SET_dom.
    [Graphical view]
    PfamiPF00856. SET. 1 hit.
    [Graphical view]
    SMARTiSM00317. SET. 1 hit.
    [Graphical view]
    PROSITEiPS50280. SET. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    A2A929-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRSKARARKL AKSDGDVVNN MYEPDPDLLA GQSAEEETED GILSPIPMGP    50
    PSPFPTSEDF TPKEGSPYEA PVYIPEDIPI PPDFELRESS IPGAGLGIWA 100
    KRKMEIGERF GPYVVTPRAA LKEADFGWEM LTDTEVSSQE SCIKKISEDL 150
    GSEKFCVDAN QAGSGSWLKY IRVACSCDDQ NLAMCQINEQ IYYKVIKDIE 200
    PGEELLVHVK EGAY 214
    Length:214
    Mass (Da):23,655
    Last modified:February 5, 2008 - v1
    Checksum:iD533826A2D227E3A
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei214 – 2141Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL611950 Genomic DNA. No translation available.
    AL627123 Genomic DNA. No translation available.
    AL627127 Genomic DNA. No translation available.
    AL627226 Genomic DNA. No translation available.

    Genome annotation databases

    EnsembliENSMUST00000124771; ENSMUSP00000117598; ENSMUSG00000039410.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL611950 Genomic DNA. No translation available.
    AL627123 Genomic DNA. No translation available.
    AL627127 Genomic DNA. No translation available.
    AL627226 Genomic DNA. No translation available.

    3D structure databases

    ProteinModelPortali A2A929.
    SMRi A2A929. Positions 27-212.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000124771 ; ENSMUSP00000117598 ; ENSMUSG00000039410 .

    Organism-specific databases

    MGIi MGI:1917923. Prdm16.

    Phylogenomic databases

    GeneTreei ENSGT00530000063676.
    HOVERGENi HBG031707.

    Miscellaneous databases

    ChiTaRSi PRDM16. mouse.
    NextBioi 35542851.
    SOURCEi Search...

    Family and domain databases

    InterProi IPR001214. SET_dom.
    [Graphical view ]
    Pfami PF00856. SET. 1 hit.
    [Graphical view ]
    SMARTi SM00317. SET. 1 hit.
    [Graphical view ]
    PROSITEi PS50280. SET. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    2. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiA2A929_MOUSE
    AccessioniPrimary (citable) accession number: A2A929
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 5, 2008
    Last sequence update: February 5, 2008
    Last modified: October 1, 2014
    This is version 50 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3