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Protein
Submitted name:

Protein Prdm2

Gene

Prdm2

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. metal ion binding Source: InterPro

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Prdm2Imported
Gene namesi
Name:Prdm2Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 4

Organism-specific databases

MGIiMGI:107628. Prdm2.

Subcellular locationi

GO - Cellular componenti

  1. Golgi apparatus Source: MGI
  2. nucleus Source: MGI
Complete GO annotation...

PTM / Processingi

Proteomic databases

MaxQBiA2A7B5.
PaxDbiA2A7B5.
PRIDEiA2A7B5.

Expressioni

Gene expression databases

ExpressionAtlasiA2A7B5. baseline.

Structurei

3D structure databases

ProteinModelPortaliA2A7B5.
SMRiA2A7B5. Positions 1-160.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 SET domain.UniRule annotation

Phylogenomic databases

eggNOGiNOG258873.
GeneTreeiENSGT00730000111050.
HOGENOMiHOG000231078.
HOVERGENiHBG053671.
InParanoidiA2A7B5.
KOiK11432.
OMAiLERHMHI.
OrthoDBiEOG7NW68B.
PhylomeDBiA2A7B5.
TreeFamiTF332173.

Family and domain databases

Gene3Di3.30.160.60. 1 hit.
InterProiIPR009170. RIZ_retinblastoma-bd_prot.
IPR001214. SET_dom.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00856. SET. 1 hit.
PF00096. zf-C2H2. 2 hits.
[Graphical view]
PIRSFiPIRSF002395. RIZ_SET. 1 hit.
SMARTiSM00317. SET. 1 hit.
SM00355. ZnF_C2H2. 8 hits.
[Graphical view]
PROSITEiPS50280. SET. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 6 hits.
PS50157. ZINC_FINGER_C2H2_2. 7 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A2A7B5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHQNTESVAV TETLAEVPEH VLRGLPEEVR LLPSAVDKTR IGVWATKPIL
60 70 80 90 100
KGKKFGPFVG DKKKRSQVRN NVYMWEVYYP NLGWMCIDAT DPEKGNWLRY
110 120 130 140 150
VNWACSGEEQ NLFPLEINRA IYYKTLKPIA PGEELLVWYN GEDNPEIAAA
160 170 180 190 200
IEEERASARS KRSSPKSRRG KKKSQENKNK GVRTQAAARK ASELDSTSAN
210 220 230 240 250
MRGSAEGPKE EDERPLASAP EQPALLPEVV SQDAVPQVAI PLPACESQPG
260 270 280 290 300
ADGKQEVTDC EVNNMKEEEE EEEEELEEEE EEEELGEDGE EEADMPNESS
310 320 330 340 350
VKEPEIRCEE KPEDLLEEPR SVPTETSEGS PGATPPPHAP RAREEANGEG
360 370 380 390 400
LETFMFPCQH CERKFATKQG LERHMHIHIS TINHAFKCKY CGKPFGTQIN
410 420 430 440 450
RRRHERRHET GLKRRPSMAL QSSEDPDDGK GENVTSKDES SPPQLGQDCL
460 470 480 490 500
ILNSEKTSQE ILNSSFVEEN GEVKELHPCK YCKKVFGTHT NMRRHQRRVH
510 520 530 540 550
ERHLIPKGVR RKGGLLEEPQ PPAEQAPPSQ NVYVPSTEPE EDGDADDVYI
560 570 580 590 600
MDISSNISEN LNYYIDGKIQ TNNSTSDCDV IEMESNSAHL YGIDCLLTPV
610 620 630 640 650
TVEITQNIKS TQGSVTDDLL KESPSSTNCE SKKRRTASPP VLPKIKAETD
660 670 680 690 700
SDSTAPSCSL SLPLSISTTE VVSFHKEKGV YLSSKLKQLL QTQDKLTPPA
710 720 730 740 750
GISTAEIPKL GPVCVSAPAS MLAVTSSRFK RRTSSPPSSP QHSPALRDFG
760 770 780 790 800
KQSDGKAAWT DTALTSKKPK LESRSDSPAW SLSGRDERET GSPPCFDEYK
810 820 830 840 850
ISKEWAASST FSSVCNQQPL DLSSGVKQKS EGTGKTPVPW ESVLDLSVHK
860 870 880 890 900
KPCDSEGKEF KENHLAQPAA KKKKPTTCML QKVLLNEYNG VSLPTESTPE
910 920 930 940 950
ATRSPSPCKS PDTQPDPELA TDSSCSAPTA ESPPEVVGPS SPPLQAASLS
960 970 980 990 1000
SGQLPPLLIP TEPSSPPPCP PVLTVATPPP PLLPTVPLPN PSCDASPQQC
1010 1020 1030 1040 1050
PSPFSNATAQ SPLPILSPTV SPSPSPIPPV EPLMSAASPG PPTLSSSSSS
1060 1070 1080 1090 1100
SSSSSFSSSS CSSSSPSPPP LSAVSSVVSS GDNLEASLPA ITLKQEESES
1110 1120 1130 1140 1150
EGLKRKEEAP AAGGQSAVQE TFSRNFVCNV CASPFLSIKD LTKHLSVHAE
1160 1170 1180 1190 1200
EWPFKCEFCV QLFKGKTDLS EHRFLLHGVG NIFVCSVCKK EFAFLCNLQQ
1210 1220 1230 1240 1250
HQRDLHPDEL CTHHEFESGT LRPQNFTDPS KAHVEHMPSL PEEPAEASRE
1260 1270 1280 1290 1300
EELNDSSEEL YTTIKIMASG IKTKEPDVRL GLNQHYPSFK PPPFQYHHRN
1310 1320 1330 1340 1350
PMGIGVTATN FTTHNIPQTF TTAIRCTKCG KSVDNMPELH KHILACASAS
1360 1370 1380 1390 1400
DKKRYTPKKN PVPLRQTVQP KNGVLVLDNS GKNAFRRMGQ PKRLSFNVEL
1410 1420 1430 1440 1450
SKMSPNKLKL NALKKKNQLV QKAILQKNRS AKQKADLRDT SEASSHICPY
1460 1470 1480 1490 1500
CDREFTYIGS LNKHAAFSCP KKPLSPSKRK VSHSSKKGGH TSSASSDRNS
1510 1520 1530 1540 1550
SSNPRRRTAD TEIKMQSMQA PLGKTRARST GPAQASLPSS SFRSRQNVKF
1560 1570 1580 1590 1600
AASVKSKKAS SSSLRNSSPV RMAKITHVEG KKSKAVAKSH STQLSSKASR
1610 1620 1630 1640 1650
SLHVKVQKSK AVLQSKTALA SKKRTDRFIV KSRERSGGPI TRSLQLAAAA
1660 1670 1680 1690 1700
DLSESRREDS SARHELKDLS YSLRLASRCA SSTAPYITRQ CRKVKAAAAT

QFQGPFFKE
Length:1,709
Mass (Da):187,203
Last modified:February 20, 2007 - v1
Checksum:iF719B0D1A70DE1B2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL606915 Genomic DNA. No translation available.
RefSeqiNP_001074824.3. NM_001081355.3.
UniGeneiMm.332020.

Genome annotation databases

EnsembliENSMUST00000105778; ENSMUSP00000101404; ENSMUSG00000057637.
GeneIDi110593.
KEGGimmu:110593.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL606915 Genomic DNA. No translation available.
RefSeqiNP_001074824.3. NM_001081355.3.
UniGeneiMm.332020.

3D structure databases

ProteinModelPortaliA2A7B5.
SMRiA2A7B5. Positions 1-160.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

MaxQBiA2A7B5.
PaxDbiA2A7B5.
PRIDEiA2A7B5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000105778; ENSMUSP00000101404; ENSMUSG00000057637.
GeneIDi110593.
KEGGimmu:110593.

Organism-specific databases

CTDi7799.
MGIiMGI:107628. Prdm2.

Phylogenomic databases

eggNOGiNOG258873.
GeneTreeiENSGT00730000111050.
HOGENOMiHOG000231078.
HOVERGENiHBG053671.
InParanoidiA2A7B5.
KOiK11432.
OMAiLERHMHI.
OrthoDBiEOG7NW68B.
PhylomeDBiA2A7B5.
TreeFamiTF332173.

Miscellaneous databases

ChiTaRSiPrdm2. mouse.
NextBioi364293.
PROiA2A7B5.
SOURCEiSearch...

Gene expression databases

ExpressionAtlasiA2A7B5. baseline.

Family and domain databases

Gene3Di3.30.160.60. 1 hit.
InterProiIPR009170. RIZ_retinblastoma-bd_prot.
IPR001214. SET_dom.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00856. SET. 1 hit.
PF00096. zf-C2H2. 2 hits.
[Graphical view]
PIRSFiPIRSF002395. RIZ_SET. 1 hit.
SMARTiSM00317. SET. 1 hit.
SM00355. ZnF_C2H2. 8 hits.
[Graphical view]
PROSITEiPS50280. SET. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 6 hits.
PS50157. ZINC_FINGER_C2H2_2. 7 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  3. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiA2A7B5_MOUSE
AccessioniPrimary (citable) accession number: A2A7B5
Entry historyi
Integrated into UniProtKB/TrEMBL: February 20, 2007
Last sequence update: February 20, 2007
Last modified: March 4, 2015
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.