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A2A7B5

- A2A7B5_MOUSE

UniProt

A2A7B5 - A2A7B5_MOUSE

Protein
Submitted name:

Protein Prdm2

Gene

Prdm2

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 67 (01 Oct 2014)
      Sequence version 1 (20 Feb 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: InterPro
    2. metal ion binding Source: InterPro

    GO - Biological processi

    1. regulation of transcription, DNA-templated Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Prdm2Imported
    Gene namesi
    Name:Prdm2Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 4

    Organism-specific databases

    MGIiMGI:107628. Prdm2.

    Subcellular locationi

    GO - Cellular componenti

    1. Golgi apparatus Source: Ensembl
    2. nucleus Source: Ensembl

    PTM / Processingi

    Proteomic databases

    PaxDbiA2A7B5.
    PRIDEiA2A7B5.

    Expressioni

    Gene expression databases

    ArrayExpressiA2A7B5.

    Structurei

    3D structure databases

    ProteinModelPortaliA2A7B5.
    SMRiA2A7B5. Positions 1-160.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 SET domain.UniRule annotation
    Contains SET domain.SAAS annotation

    Phylogenomic databases

    eggNOGiNOG258873.
    GeneTreeiENSGT00730000111050.
    HOGENOMiHOG000231078.
    HOVERGENiHBG053671.
    InParanoidiA2A7B5.
    KOiK11432.
    OMAiTHTNMRR.
    OrthoDBiEOG7NW68B.
    PhylomeDBiA2A7B5.
    TreeFamiTF332173.

    Family and domain databases

    Gene3Di3.30.160.60. 1 hit.
    InterProiIPR009170. RIZ_retinblastoma-bd_prot.
    IPR001214. SET_dom.
    IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    [Graphical view]
    PfamiPF00856. SET. 1 hit.
    PF00096. zf-C2H2. 2 hits.
    [Graphical view]
    PIRSFiPIRSF002395. RIZ_SET. 1 hit.
    SMARTiSM00317. SET. 1 hit.
    SM00355. ZnF_C2H2. 8 hits.
    [Graphical view]
    PROSITEiPS50280. SET. 1 hit.
    PS00028. ZINC_FINGER_C2H2_1. 6 hits.
    PS50157. ZINC_FINGER_C2H2_2. 7 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A2A7B5-1 [UniParc]FASTAAdd to Basket

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    MHQNTESVAV TETLAEVPEH VLRGLPEEVR LLPSAVDKTR IGVWATKPIL     50
    KGKKFGPFVG DKKKRSQVRN NVYMWEVYYP NLGWMCIDAT DPEKGNWLRY 100
    VNWACSGEEQ NLFPLEINRA IYYKTLKPIA PGEELLVWYN GEDNPEIAAA 150
    IEEERASARS KRSSPKSRRG KKKSQENKNK GVRTQAAARK ASELDSTSAN 200
    MRGSAEGPKE EDERPLASAP EQPALLPEVV SQDAVPQVAI PLPACESQPG 250
    ADGKQEVTDC EVNNMKEEEE EEEEELEEEE EEEELGEDGE EEADMPNESS 300
    VKEPEIRCEE KPEDLLEEPR SVPTETSEGS PGATPPPHAP RAREEANGEG 350
    LETFMFPCQH CERKFATKQG LERHMHIHIS TINHAFKCKY CGKPFGTQIN 400
    RRRHERRHET GLKRRPSMAL QSSEDPDDGK GENVTSKDES SPPQLGQDCL 450
    ILNSEKTSQE ILNSSFVEEN GEVKELHPCK YCKKVFGTHT NMRRHQRRVH 500
    ERHLIPKGVR RKGGLLEEPQ PPAEQAPPSQ NVYVPSTEPE EDGDADDVYI 550
    MDISSNISEN LNYYIDGKIQ TNNSTSDCDV IEMESNSAHL YGIDCLLTPV 600
    TVEITQNIKS TQGSVTDDLL KESPSSTNCE SKKRRTASPP VLPKIKAETD 650
    SDSTAPSCSL SLPLSISTTE VVSFHKEKGV YLSSKLKQLL QTQDKLTPPA 700
    GISTAEIPKL GPVCVSAPAS MLAVTSSRFK RRTSSPPSSP QHSPALRDFG 750
    KQSDGKAAWT DTALTSKKPK LESRSDSPAW SLSGRDERET GSPPCFDEYK 800
    ISKEWAASST FSSVCNQQPL DLSSGVKQKS EGTGKTPVPW ESVLDLSVHK 850
    KPCDSEGKEF KENHLAQPAA KKKKPTTCML QKVLLNEYNG VSLPTESTPE 900
    ATRSPSPCKS PDTQPDPELA TDSSCSAPTA ESPPEVVGPS SPPLQAASLS 950
    SGQLPPLLIP TEPSSPPPCP PVLTVATPPP PLLPTVPLPN PSCDASPQQC 1000
    PSPFSNATAQ SPLPILSPTV SPSPSPIPPV EPLMSAASPG PPTLSSSSSS 1050
    SSSSSFSSSS CSSSSPSPPP LSAVSSVVSS GDNLEASLPA ITLKQEESES 1100
    EGLKRKEEAP AAGGQSAVQE TFSRNFVCNV CASPFLSIKD LTKHLSVHAE 1150
    EWPFKCEFCV QLFKGKTDLS EHRFLLHGVG NIFVCSVCKK EFAFLCNLQQ 1200
    HQRDLHPDEL CTHHEFESGT LRPQNFTDPS KAHVEHMPSL PEEPAEASRE 1250
    EELNDSSEEL YTTIKIMASG IKTKEPDVRL GLNQHYPSFK PPPFQYHHRN 1300
    PMGIGVTATN FTTHNIPQTF TTAIRCTKCG KSVDNMPELH KHILACASAS 1350
    DKKRYTPKKN PVPLRQTVQP KNGVLVLDNS GKNAFRRMGQ PKRLSFNVEL 1400
    SKMSPNKLKL NALKKKNQLV QKAILQKNRS AKQKADLRDT SEASSHICPY 1450
    CDREFTYIGS LNKHAAFSCP KKPLSPSKRK VSHSSKKGGH TSSASSDRNS 1500
    SSNPRRRTAD TEIKMQSMQA PLGKTRARST GPAQASLPSS SFRSRQNVKF 1550
    AASVKSKKAS SSSLRNSSPV RMAKITHVEG KKSKAVAKSH STQLSSKASR 1600
    SLHVKVQKSK AVLQSKTALA SKKRTDRFIV KSRERSGGPI TRSLQLAAAA 1650
    DLSESRREDS SARHELKDLS YSLRLASRCA SSTAPYITRQ CRKVKAAAAT 1700
    QFQGPFFKE 1709
    Length:1,709
    Mass (Da):187,203
    Last modified:February 20, 2007 - v1
    Checksum:iF719B0D1A70DE1B2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL606915 Genomic DNA. No translation available.
    RefSeqiNP_001074824.3. NM_001081355.3.
    UniGeneiMm.332020.

    Genome annotation databases

    EnsembliENSMUST00000105778; ENSMUSP00000101404; ENSMUSG00000057637.
    GeneIDi110593.
    KEGGimmu:110593.
    UCSCiuc012doh.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL606915 Genomic DNA. No translation available.
    RefSeqi NP_001074824.3. NM_001081355.3.
    UniGenei Mm.332020.

    3D structure databases

    ProteinModelPortali A2A7B5.
    SMRi A2A7B5. Positions 1-160.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PaxDbi A2A7B5.
    PRIDEi A2A7B5.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000105778 ; ENSMUSP00000101404 ; ENSMUSG00000057637 .
    GeneIDi 110593.
    KEGGi mmu:110593.
    UCSCi uc012doh.1. mouse.

    Organism-specific databases

    CTDi 7799.
    MGIi MGI:107628. Prdm2.

    Phylogenomic databases

    eggNOGi NOG258873.
    GeneTreei ENSGT00730000111050.
    HOGENOMi HOG000231078.
    HOVERGENi HBG053671.
    InParanoidi A2A7B5.
    KOi K11432.
    OMAi THTNMRR.
    OrthoDBi EOG7NW68B.
    PhylomeDBi A2A7B5.
    TreeFami TF332173.

    Miscellaneous databases

    ChiTaRSi PRDM2. mouse.
    NextBioi 364293.
    PROi A2A7B5.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi A2A7B5.

    Family and domain databases

    Gene3Di 3.30.160.60. 1 hit.
    InterProi IPR009170. RIZ_retinblastoma-bd_prot.
    IPR001214. SET_dom.
    IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    [Graphical view ]
    Pfami PF00856. SET. 1 hit.
    PF00096. zf-C2H2. 2 hits.
    [Graphical view ]
    PIRSFi PIRSF002395. RIZ_SET. 1 hit.
    SMARTi SM00317. SET. 1 hit.
    SM00355. ZnF_C2H2. 8 hits.
    [Graphical view ]
    PROSITEi PS50280. SET. 1 hit.
    PS00028. ZINC_FINGER_C2H2_1. 6 hits.
    PS50157. ZINC_FINGER_C2H2_2. 7 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    3. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiA2A7B5_MOUSE
    AccessioniPrimary (citable) accession number: A2A7B5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 20, 2007
    Last sequence update: February 20, 2007
    Last modified: October 1, 2014
    This is version 67 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3