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Protein
Submitted name:

Double-stranded RNA-binding protein Staufen homolog 1

Gene

Stau1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Double-stranded RNA-binding protein Staufen homolog 1Imported
Gene namesi
Name:Stau1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 2

Organism-specific databases

MGIiMGI:1338864. Stau1.

PTM / Processingi

Proteomic databases

EPDiA2A5R8.
MaxQBiA2A5R8.
PaxDbiA2A5R8.
PRIDEiA2A5R8.

Expressioni

Gene expression databases

BgeeiA2A5R8.
ExpressionAtlasiA2A5R8. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000104861.

Structurei

3D structure databases

ProteinModelPortaliA2A5R8.
SMRiA2A5R8. Positions 98-164, 199-267.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini96 – 16368DRBM (double-stranded RNA-binding)InterPro annotationAdd
BLAST
Domaini198 – 26669DRBM (double-stranded RNA-binding)InterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG3732. Eukaryota.
ENOG410XSCK. LUCA.
GeneTreeiENSGT00830000128290.
HOGENOMiHOG000231025.
HOVERGENiHBG005013.

Family and domain databases

Gene3Di3.30.160.20. 3 hits.
InterProiIPR014720. dsRBD_dom.
IPR032478. Staufen_C.
[Graphical view]
PfamiPF00035. dsrm. 2 hits.
PF16482. Staufen_C. 1 hit.
[Graphical view]
SMARTiSM00358. DSRM. 2 hits.
[Graphical view]
PROSITEiPS50137. DS_RBD. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A2A5R8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYKPVDPHSR MQSTYSYGMR GGAYPPRYFY PFPVPPLLYQ VELSVGGQQF
60 70 80 90 100
NGKGKMRPPV KHDAPARALR TLQSEPLPER LEVNGREAEE ENLNKSEISQ
110 120 130 140 150
VFEIALKRNL PVNFEVARES GPPHMKNFVT RVSVGEFVGE GEGKSKKISK
160 170 180 190 200
KNAARAVLEQ LRRLPPLPAV ERVKPRIKKK SQPTCKLQTA PDYGQGMNPI
210 220 230 240 250
SRLAQIQQAK KEKEPEYMLL TERGLPRRRE FVMQVKVGHH TAEGVGTNKK
260 270 280 290 300
VAKRNAAENM LEILGFKVPQ AQPAKPALKS EEKTPVKKPG DGRKVTFFEP
310 320 330 340 350
SPGDENGTSN KDEEFRMPYL SHQQLPAGIL PMVPEVAQAV GVSQGHHTKD
360 370 380 390 400
FTRAAPNPAK ATVTAMIARE LLYGGTSPTA ETILKSNISS GHVPHGPRTR
410 420 430 440 450
PSEQLYYLSR AQGFQVEYKD FPKNNKNECV SLINCSSQPP LVSHGIGKDV
460 470 480
ESCHDMAALN ILKLLSELDQ QSTEMPRTGN GPVSA
Length:485
Mass (Da):53,747
Last modified:February 20, 2007 - v1
Checksum:i5C7D880DC3105EB9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL591711 Genomic DNA. No translation available.
RefSeqiNP_001278089.1. NM_001291160.1.
UniGeneiMm.73276.

Genome annotation databases

EnsembliENSMUST00000049412; ENSMUSP00000042626; ENSMUSG00000039536.
GeneIDi20853.
UCSCiuc008nyx.3. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL591711 Genomic DNA. No translation available.
RefSeqiNP_001278089.1. NM_001291160.1.
UniGeneiMm.73276.

3D structure databases

ProteinModelPortaliA2A5R8.
SMRiA2A5R8. Positions 98-164, 199-267.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000104861.

Proteomic databases

EPDiA2A5R8.
MaxQBiA2A5R8.
PaxDbiA2A5R8.
PRIDEiA2A5R8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000049412; ENSMUSP00000042626; ENSMUSG00000039536.
GeneIDi20853.
UCSCiuc008nyx.3. mouse.

Organism-specific databases

CTDi6780.
MGIiMGI:1338864. Stau1.

Phylogenomic databases

eggNOGiKOG3732. Eukaryota.
ENOG410XSCK. LUCA.
GeneTreeiENSGT00830000128290.
HOGENOMiHOG000231025.
HOVERGENiHBG005013.

Miscellaneous databases

ChiTaRSiStau1. mouse.
NextBioi35542619.
SOURCEiSearch...

Gene expression databases

BgeeiA2A5R8.
ExpressionAtlasiA2A5R8. baseline and differential.

Family and domain databases

Gene3Di3.30.160.20. 3 hits.
InterProiIPR014720. dsRBD_dom.
IPR032478. Staufen_C.
[Graphical view]
PfamiPF00035. dsrm. 2 hits.
PF16482. Staufen_C. 1 hit.
[Graphical view]
SMARTiSM00358. DSRM. 2 hits.
[Graphical view]
PROSITEiPS50137. DS_RBD. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  2. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  3. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiA2A5R8_MOUSE
AccessioniPrimary (citable) accession number: A2A5R8
Entry historyi
Integrated into UniProtKB/TrEMBL: February 20, 2007
Last sequence update: February 20, 2007
Last modified: March 16, 2016
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.