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Protein
Submitted name:

Synaptogyrin-1

Gene

SYNGR1

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Synaptogyrin-1Imported
Gene namesi
Name:SYNGR1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 22

Organism-specific databases

HGNCiHGNC:11498. SYNGR1.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei30 – 49HelicalSequence analysisAdd BLAST20
Transmembranei69 – 92HelicalSequence analysisAdd BLAST24

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000100321.

PTM / Processingi

Proteomic databases

MaxQBiA2A283.
PaxDbiA2A283.
PeptideAtlasiA2A283.
PRIDEiA2A283.

Expressioni

Gene expression databases

BgeeiENSG00000100321.
ExpressionAtlasiA2A283. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000332287.

Structurei

3D structure databases

ProteinModelPortaliA2A283.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini20 – 118MARVELInterPro annotationAdd BLAST99

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiKOG4016. Eukaryota.
ENOG4111F8S. LUCA.
GeneTreeiENSGT00510000046450.
HOGENOMiHOG000230863.
HOVERGENiHBG000896.

Family and domain databases

InterProiIPR008253. Marvel.
IPR016579. Synaptogyrin.
[Graphical view]
PANTHERiPTHR10838. PTHR10838. 1 hit.
PfamiPF01284. MARVEL. 1 hit.
[Graphical view]
PROSITEiPS51225. MARVEL. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A2A283-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEGGAYGAGK AGGAFDPYTL VRQPHTILRV VSWLFSIVVF GSIVNEGYLN
60 70 80 90 100
SASEGEEFCI YNRNPNACSY GVAVGVLAFL TCLLYLALDV YFPQISSVKD
110
RKKAVLSDIG VSAWEMHS
Length:118
Mass (Da):12,790
Last modified:February 20, 2007 - v1
Checksum:i284158F1C0CA739E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL022326 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENST00000216155; ENSP00000216155; ENSG00000100321.
UCSCiuc062ekx.1. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL022326 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortaliA2A283.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000332287.

Proteomic databases

MaxQBiA2A283.
PaxDbiA2A283.
PeptideAtlasiA2A283.
PRIDEiA2A283.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000216155; ENSP00000216155; ENSG00000100321.
UCSCiuc062ekx.1. human.

Organism-specific databases

HGNCiHGNC:11498. SYNGR1.
OpenTargetsiENSG00000100321.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG4016. Eukaryota.
ENOG4111F8S. LUCA.
GeneTreeiENSGT00510000046450.
HOGENOMiHOG000230863.
HOVERGENiHBG000896.

Miscellaneous databases

ChiTaRSiSYNGR1. human.

Gene expression databases

BgeeiENSG00000100321.
ExpressionAtlasiA2A283. baseline and differential.

Family and domain databases

InterProiIPR008253. Marvel.
IPR016579. Synaptogyrin.
[Graphical view]
PANTHERiPTHR10838. PTHR10838. 1 hit.
PfamiPF01284. MARVEL. 1 hit.
[Graphical view]
PROSITEiPS51225. MARVEL. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiA2A283_HUMAN
AccessioniPrimary (citable) accession number: A2A283
Entry historyi
Integrated into UniProtKB/TrEMBL: February 20, 2007
Last sequence update: February 20, 2007
Last modified: November 2, 2016
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.