Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Nyctalopin

Gene

Nyx

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
NyctalopinImported
Submitted name:
Nyctalopin (Predicted)Imported
Gene namesi
Name:NyxImported
Synonyms:Nyx_predictedImported
ORF Names:rCG_42945Imported
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome X

Organism-specific databases

RGDi1561300. Nyx.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 18Sequence analysisAdd BLAST18
ChainiPRO_500968229219 – 476Sequence analysisAdd BLAST458

Expressioni

Gene expression databases

BgeeiENSRNOG00000009646.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000013382.

Structurei

3D structure databases

ProteinModelPortaliA1XIQ3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini25 – 61LRRNTInterPro annotationAdd BLAST37
Domaini331 – 382LRRCTInterPro annotationAdd BLAST52

Keywords - Domaini

Leucine-rich repeatSAAS annotation, RepeatSAAS annotation, SignalSequence analysis

Phylogenomic databases

eggNOGiKOG4237. Eukaryota.
COG4886. LUCA.
GeneTreeiENSGT00760000118777.
HOGENOMiHOG000230477.
HOVERGENiHBG031762.
KOiK08129.
OMAiEACTRTC.
OrthoDBiEOG091G05RT.
TreeFamiTF337463.

Family and domain databases

Gene3Di3.80.10.10. 2 hits.
InterProiView protein in InterPro
IPR000483. Cys-rich_flank_reg_C.
IPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
IPR000372. LRRNT.
PfamiView protein in Pfam
PF13855. LRR_8. 2 hits.
SMARTiView protein in SMART
SM00369. LRR_TYP. 9 hits.
SM00082. LRRCT. 1 hit.
SM00013. LRRNT. 1 hit.
SUPFAMiSSF52058. SSF52058. 1 hit.

Sequencei

Sequence statusi: Complete.

A1XIQ3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLNLLLYAVV FSLPCTRATE ACLRACPAAC TCSNVERGCS VRCDRAGLQR
60 70 80 90 100
VPTEFPCEAA SIDLDRNGLR ILGERAFGTL PSLRCLSLRH NNLSFITPGA
110 120 130 140 150
FKGLPRLAEL RLAHNGELRY LHVRTFAALG RLRRLDLAAC RLFSVPERLL
160 170 180 190 200
AELPALRELT AFDNLFRRVP GALRGLANLT HAHFERSRIE AVASSSLLGM
210 220 230 240 250
RRLRSLSLQA NRVRAVHAGA FGDCVALEHL LLNDNLLASL PAAAFRGLRR
260 270 280 290 300
LRTLNLGGNA LGSVARGWFS DLAELELLYL DRNSITFVEE GAFQNLSGLL
310 320 330 340 350
ALHLNGNRLT VLSWAAFQPG FFLGRLFLFR NPWRCDCHLE WLRDWMEGSG
360 370 380 390 400
RVADVACASP GSVAGQDLSQ VVFERSSDGI CVDPDELNFT TFSPGPSPEP
410 420 430 440 450
VATTVSRFSS LLSKLLAPRA PVEEVANTTW ELVNVSLNDS FRSHGVMVMC
460 470
YKATFLFTSC LWLSLAQYVV LGPQRD
Length:476
Mass (Da):52,471
Last modified:February 6, 2007 - v1
Checksum:i0E80942CC3657497
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07037036 Genomic DNA. No translation available.
DQ393414 mRNA. Translation: ABD52240.1.
CH474009 Genomic DNA. Translation: EDL97655.1.
RefSeqiNP_001094437.1. NM_001100967.1.
UniGeneiRn.153545.

Genome annotation databases

EnsembliENSRNOT00000013382; ENSRNOP00000013382; ENSRNOG00000009646.
GeneIDi302516.
KEGGirno:302516.
UCSCiRGD:1561300. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07037036 Genomic DNA. No translation available.
DQ393414 mRNA. Translation: ABD52240.1.
CH474009 Genomic DNA. Translation: EDL97655.1.
RefSeqiNP_001094437.1. NM_001100967.1.
UniGeneiRn.153545.

3D structure databases

ProteinModelPortaliA1XIQ3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000013382.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000013382; ENSRNOP00000013382; ENSRNOG00000009646.
GeneIDi302516.
KEGGirno:302516.
UCSCiRGD:1561300. rat.

Organism-specific databases

CTDi60506.
RGDi1561300. Nyx.

Phylogenomic databases

eggNOGiKOG4237. Eukaryota.
COG4886. LUCA.
GeneTreeiENSGT00760000118777.
HOGENOMiHOG000230477.
HOVERGENiHBG031762.
KOiK08129.
OMAiEACTRTC.
OrthoDBiEOG091G05RT.
TreeFamiTF337463.

Gene expression databases

BgeeiENSRNOG00000009646.

Family and domain databases

Gene3Di3.80.10.10. 2 hits.
InterProiView protein in InterPro
IPR000483. Cys-rich_flank_reg_C.
IPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
IPR000372. LRRNT.
PfamiView protein in Pfam
PF13855. LRR_8. 2 hits.
SMARTiView protein in SMART
SM00369. LRR_TYP. 9 hits.
SM00082. LRRCT. 1 hit.
SM00013. LRRNT. 1 hit.
SUPFAMiSSF52058. SSF52058. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiA1XIQ3_RAT
AccessioniPrimary (citable) accession number: A1XIQ3
Entry historyiIntegrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: April 12, 2017
This is version 86 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.