Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

A1W8V8

- A1W8V8_ACISJ

UniProt

A1W8V8 - A1W8V8_ACISJ

Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

Ajs_2523

Organism
Acidovorax sp. (strain JS42)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 50 (01 Oct 2014)
      Sequence version 1 (06 Feb 2007)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciASP232721:GHWE-2555-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:Ajs_2523Imported
    OrganismiAcidovorax sp. (strain JS42)Imported
    Taxonomic identifieri232721 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeAcidovorax
    ProteomesiUP000000645: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi232721.Ajs_2523.

    Structurei

    3D structure databases

    ProteinModelPortaliA1W8V8.
    SMRiA1W8V8. Positions 542-829.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A1W8V8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPRKDPLAVY KQKRNFAVTP EPADGGAQSQ ALQYVIQKHW ASRLHYDLRL    50
    ELDGTMKSWA VPKGPSYDPA DKRMAVQVED HPISYNQFEG QIPPRQYGAG 100
    RVIIWDRGYW VPQGNPREDY RKGKLKFEIH GHKLHGHWTL VRMHGRDDDK 150
    QPPWLLIKEC DGLERAAEEF NVVDEMPDSV ADQPPVAPPA RAFAQRAGPA 200
    QIQPTAAAVP WTSAPTAPLP DQLSPQLATL VDGPPADLTQ WLWELKFDGY 250
    RMLARVQRGK ARLYTRNGND WTARMPALAQ ALAALPLSSA WIDGEVLVLD 300
    AQGVPDFQAL QNAFDGRSTD ALVFYAFDLP YAHGRDLRQM PLAERRALLR 350
    SVLQPASSDR VRFSEAFEAR PADLVASACR LGFEGVIGKR KDSVYASRRS 400
    TDWIKLKCSH RQEFVIGGYT DPQGSRTGIG SLLLGVHDEG GALRYAGNVG 450
    TGFSERVLAD LARRLGALRT QDSPFAQPRS IPRKVHWVRP TLVAEVSFAE 500
    WTKEGKVRHA VFRGLRDDKP AAAIVHEEPA HLQGAAPSRA ARVGGLQVTS 550
    PARVVDPSTG FTKLDLVRYY ATVAPLMLPH LQGRPVSLLR APQGLEGELF 600
    FQKHLDTGAL DGVSALSPDL DPGHPPLLEV ATAQGLLSAA QMNTVEFHTW 650
    NARKDRIERP NRITFDLDPG EGVPWAHVQE GAALVRLMLT ELGLPSFLKT 700
    SGGKGLHVVV PIKRLHGWDA VKDFSQAVVQ HLARTLPQRF VAKSGPRNRV 750
    GKIFVDYLRN GFGATTACAW TARARPGMGV SVPVAWQELD ALTGGAHWTV 800
    QTVDRRLKTG NGPWSGYDEA AVSIGPAIKA LGEKRHT 837
    Length:837
    Mass (Da):92,211
    Last modified:February 6, 2007 - v1
    Checksum:i89D8CDCB825940E2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000539 Genomic DNA. Translation: ABM42683.1.
    RefSeqiWP_011805722.1. NC_008782.1.
    YP_986759.1. NC_008782.1.

    Genome annotation databases

    EnsemblBacteriaiABM42683; ABM42683; Ajs_2523.
    GeneIDi4673244.
    KEGGiajs:Ajs_2523.
    PATRICi20690405. VBIAciSp27161_2732.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000539 Genomic DNA. Translation: ABM42683.1 .
    RefSeqi WP_011805722.1. NC_008782.1.
    YP_986759.1. NC_008782.1.

    3D structure databases

    ProteinModelPortali A1W8V8.
    SMRi A1W8V8. Positions 542-829.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 232721.Ajs_2523.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABM42683 ; ABM42683 ; Ajs_2523 .
    GeneIDi 4673244.
    KEGGi ajs:Ajs_2523.
    PATRICi 20690405. VBIAciSp27161_2732.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci ASP232721:GHWE-2555-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome 1 of Acidovorax sp. JS42."
      Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M.
      , Hauser L., Kyrpides N., Kim E., Stahl D., Richardson P.
      Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: JS42Imported.

    Entry informationi

    Entry nameiA1W8V8_ACISJ
    AccessioniPrimary (citable) accession number: A1W8V8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 6, 2007
    Last sequence update: February 6, 2007
    Last modified: October 1, 2014
    This is version 50 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3