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A1W8V8

- A1W8V8_ACISJ

UniProt

A1W8V8 - A1W8V8_ACISJ

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Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene
Ajs_2523
Organism
Acidovorax sp. (strain JS42)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciASP232721:GHWE-2555-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:Ajs_2523Imported
OrganismiAcidovorax sp. (strain JS42)Imported
Taxonomic identifieri232721 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeAcidovorax
ProteomesiUP000000645: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi232721.Ajs_2523.

Structurei

3D structure databases

ProteinModelPortaliA1W8V8.
SMRiA1W8V8. Positions 542-829.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A1W8V8-1 [UniParc]FASTAAdd to Basket

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MPRKDPLAVY KQKRNFAVTP EPADGGAQSQ ALQYVIQKHW ASRLHYDLRL    50
ELDGTMKSWA VPKGPSYDPA DKRMAVQVED HPISYNQFEG QIPPRQYGAG 100
RVIIWDRGYW VPQGNPREDY RKGKLKFEIH GHKLHGHWTL VRMHGRDDDK 150
QPPWLLIKEC DGLERAAEEF NVVDEMPDSV ADQPPVAPPA RAFAQRAGPA 200
QIQPTAAAVP WTSAPTAPLP DQLSPQLATL VDGPPADLTQ WLWELKFDGY 250
RMLARVQRGK ARLYTRNGND WTARMPALAQ ALAALPLSSA WIDGEVLVLD 300
AQGVPDFQAL QNAFDGRSTD ALVFYAFDLP YAHGRDLRQM PLAERRALLR 350
SVLQPASSDR VRFSEAFEAR PADLVASACR LGFEGVIGKR KDSVYASRRS 400
TDWIKLKCSH RQEFVIGGYT DPQGSRTGIG SLLLGVHDEG GALRYAGNVG 450
TGFSERVLAD LARRLGALRT QDSPFAQPRS IPRKVHWVRP TLVAEVSFAE 500
WTKEGKVRHA VFRGLRDDKP AAAIVHEEPA HLQGAAPSRA ARVGGLQVTS 550
PARVVDPSTG FTKLDLVRYY ATVAPLMLPH LQGRPVSLLR APQGLEGELF 600
FQKHLDTGAL DGVSALSPDL DPGHPPLLEV ATAQGLLSAA QMNTVEFHTW 650
NARKDRIERP NRITFDLDPG EGVPWAHVQE GAALVRLMLT ELGLPSFLKT 700
SGGKGLHVVV PIKRLHGWDA VKDFSQAVVQ HLARTLPQRF VAKSGPRNRV 750
GKIFVDYLRN GFGATTACAW TARARPGMGV SVPVAWQELD ALTGGAHWTV 800
QTVDRRLKTG NGPWSGYDEA AVSIGPAIKA LGEKRHT 837
Length:837
Mass (Da):92,211
Last modified:February 6, 2007 - v1
Checksum:i89D8CDCB825940E2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000539 Genomic DNA. Translation: ABM42683.1.
RefSeqiWP_011805722.1. NC_008782.1.
YP_986759.1. NC_008782.1.

Genome annotation databases

EnsemblBacteriaiABM42683; ABM42683; Ajs_2523.
GeneIDi4673244.
KEGGiajs:Ajs_2523.
PATRICi20690405. VBIAciSp27161_2732.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000539 Genomic DNA. Translation: ABM42683.1 .
RefSeqi WP_011805722.1. NC_008782.1.
YP_986759.1. NC_008782.1.

3D structure databases

ProteinModelPortali A1W8V8.
SMRi A1W8V8. Positions 542-829.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 232721.Ajs_2523.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABM42683 ; ABM42683 ; Ajs_2523 .
GeneIDi 4673244.
KEGGi ajs:Ajs_2523.
PATRICi 20690405. VBIAciSp27161_2732.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci ASP232721:GHWE-2555-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome 1 of Acidovorax sp. JS42."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M.
    , Hauser L., Kyrpides N., Kim E., Stahl D., Richardson P.
    Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JS42.

Entry informationi

Entry nameiA1W8V8_ACISJ
AccessioniPrimary (citable) accession number: A1W8V8
Entry historyi
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: September 3, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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