Skip Header

Contribute Send feedback
Read comments (?) or add your own

A1W8V8 (A1W8V8_ACISJ) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module EMBL ABM42683.1
EC=6.5.1.1 EMBL ABM42683.1
Gene names
Ordered Locus Names:Ajs_2523 EMBL ABM42683.1
OrganismAcidovorax sp. (strain JS42) [Complete proteome] [HAMAP] EMBL ABM42683.1
Taxonomic identifier232721 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Acidovorax

Protein attributes

Sequence length837 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABM42683.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A1W8V8 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: 89D8CDCB825940E2

FASTA83792,211
        10         20         30         40         50         60 
MPRKDPLAVY KQKRNFAVTP EPADGGAQSQ ALQYVIQKHW ASRLHYDLRL ELDGTMKSWA 

        70         80         90        100        110        120 
VPKGPSYDPA DKRMAVQVED HPISYNQFEG QIPPRQYGAG RVIIWDRGYW VPQGNPREDY 

       130        140        150        160        170        180 
RKGKLKFEIH GHKLHGHWTL VRMHGRDDDK QPPWLLIKEC DGLERAAEEF NVVDEMPDSV 

       190        200        210        220        230        240 
ADQPPVAPPA RAFAQRAGPA QIQPTAAAVP WTSAPTAPLP DQLSPQLATL VDGPPADLTQ 

       250        260        270        280        290        300 
WLWELKFDGY RMLARVQRGK ARLYTRNGND WTARMPALAQ ALAALPLSSA WIDGEVLVLD 

       310        320        330        340        350        360 
AQGVPDFQAL QNAFDGRSTD ALVFYAFDLP YAHGRDLRQM PLAERRALLR SVLQPASSDR 

       370        380        390        400        410        420 
VRFSEAFEAR PADLVASACR LGFEGVIGKR KDSVYASRRS TDWIKLKCSH RQEFVIGGYT 

       430        440        450        460        470        480 
DPQGSRTGIG SLLLGVHDEG GALRYAGNVG TGFSERVLAD LARRLGALRT QDSPFAQPRS 

       490        500        510        520        530        540 
IPRKVHWVRP TLVAEVSFAE WTKEGKVRHA VFRGLRDDKP AAAIVHEEPA HLQGAAPSRA 

       550        560        570        580        590        600 
ARVGGLQVTS PARVVDPSTG FTKLDLVRYY ATVAPLMLPH LQGRPVSLLR APQGLEGELF 

       610        620        630        640        650        660 
FQKHLDTGAL DGVSALSPDL DPGHPPLLEV ATAQGLLSAA QMNTVEFHTW NARKDRIERP 

       670        680        690        700        710        720 
NRITFDLDPG EGVPWAHVQE GAALVRLMLT ELGLPSFLKT SGGKGLHVVV PIKRLHGWDA 

       730        740        750        760        770        780 
VKDFSQAVVQ HLARTLPQRF VAKSGPRNRV GKIFVDYLRN GFGATTACAW TARARPGMGV 

       790        800        810        820        830 
SVPVAWQELD ALTGGAHWTV QTVDRRLKTG NGPWSGYDEA AVSIGPAIKA LGEKRHT

« Hide

References

[1]"Complete sequence of chromosome 1 of Acidovorax sp. JS42."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Kim E., Stahl D., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JS42.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000539 Genomic DNA. Translation: ABM42683.1.
RefSeqYP_986759.1. NC_008782.1.

3D structure databases

ProteinModelPortalA1W8V8.
SMRA1W8V8. Positions 542-829.
ModBaseSearch...

Protein-protein interaction databases

STRING232721.Ajs_2523.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABM42683; ABM42683; Ajs_2523.
GeneID4673244.
KEGGajs:Ajs_2523.
PATRIC20690405. VBIAciSp27161_2732.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMALVAECEF.
ProtClustDBPRK05972.

Enzyme and pathway databases

BioCycASP232721:GHWE-2555-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA1W8V8_ACISJ
AccessionPrimary (citable) accession number: A1W8V8
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: May 29, 2013
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info