Reviewed, UniProtKB/Swiss-Prot A1W776 (AMPA_ACISJ)

Names and origin

Protein names

Recommended name:
    Probable cytosol aminopeptidase
    EC=3.4.11.1
Alternative name(s):
    Leucine aminopeptidase
      Short name=LAP
    Leucyl aminopeptidase

Gene names

Name:	pepA
Ordered Locus Names:	Ajs_1921

Organism

Acidovorax sp. (strain JS42) [Complete proteome] [HAMAP]

Taxonomic identifier

232721 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Acidovorax

Protein attributes

Sequence length	496 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides By similarity.
Catalytic activity	Release of an N-terminal amino acid, Xaa-|-Yaa-, in which Xaa is preferably Leu, but may be other amino acids including Pro although not Arg or Lys, and Yaa may be Pro. Amino acid amides and methyl esters are also readily hydrolyzed, but rates on arylamides are exceedingly low. HAMAP MF_00181
Cofactor	Binds 2 manganese ions per subunit By similarity.
Subcellular location	Cytoplasm By similarity.
Sequence similarities	Belongs to the peptidase M17 family.

Ontologies

Keywords
Cellular component	Cytoplasm
Ligand	Manganese Metal-binding
Molecular function	Aminopeptidase Hydrolase Protease
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	proteolysis Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	aminopeptidase activity Inferred from electronic annotation. Source: HAMAP manganese ion binding Inferred from electronic annotation. Source: HAMAP metalloexopeptidase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 496	496	Probable cytosol aminopeptidase HAMAP MF_00181		PRO_1000118445
Sites
	Active site	263	1	Potential
	Active site	337	1	Potential
	Metal binding	251	1	Manganese 2 By similarity
	Metal binding	256	1	Manganese 1 By similarity
	Metal binding	256	1	Manganese 2 By similarity
	Metal binding	274	1	Manganese 2 By similarity
	Metal binding	333	1	Manganese 1 By similarity
	Metal binding	335	1	Manganese 1 By similarity
	Metal binding	335	1	Manganese 2 By similarity

Sequences

	Sequence		Length	Mass (Da)
	A1W776-1 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: 0E91479F74EB03DA	FASTA	496	51,232
	10 20 30 40 50 60 MNFELKTLSL AASAAHKCDL LVVLVPEGFL PGSDVLSTMV AHALKQGDLE VKPGKLLQCY 70 80 90 100 110 120 APAGVAARRV VLLGCGAADA HAVRQAMQAL SPSFKLPSVK RVALVFGTSA QRGAIGAAVR 130 140 150 160 170 180 AVADGSYVYT ATKTKAEPRA LLRVTLGVPN AGAAQPEFAT ATAVAAGVEF AREWANRPAN 190 200 210 220 230 240 HATPTLVANA AKTLAKYPGV QCQVLGPAEV AKLGMGAFLA VAQGSDQPLR LVELRYNGAA 250 260 270 280 290 300 RTQAPVVLVG KGITFDTGGI SLKPAAEMDE MKFDMGGAAS VLGVFRALAE LRPAINVVGL 310 320 330 340 350 360 IPACENMPDG KAVKPGDVVT SMSGQTIEIL NTDAEGRLVL CDALTYAARF KPAAVVDIAT 370 380 390 400 410 420 LTGACVVALG GLRSGLFASD DLLAEQLLSA GDAALDPCWR MPLDDEYAEG LKSNFADMAN 430 440 450 460 470 480 VAGRAGGSIT AAKFLQRFVG DTPWAHLDIA GTAWKGGAAK GATGRPVALL VHYLLDQATV 490 STVKPKQKTR SRKSVA

References

[1]

"Complete sequence of chromosome 1 of Acidovorax sp. JS42." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Kim E., Stahl D., Richardson P. Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CP000539 Genomic DNA. Translation: ABM42101.1.
RefSeq	YP_986177.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	A1W776.
Protein family/group databases
MEROPS	M17.003.
Genome annotation databases
GeneID	4672422.
GenomeReviews	Gene locus Ajs_1921 in contig CP000539_GR.
KEGG	ajs:Ajs_1921.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	LPLARIC.
Family and domain databases
HAMAP	MF_00181. [Tree]
InterPro	IPR011356. Peptidase_M17. IPR000819. Peptidase_M17_C. IPR008283. Peptidase_M17_N. [Graphical view]
PANTHER	PTHR11963:SF3. Peptidase_M17. 1 hit.
Pfam	PF00883. Peptidase_M17. 1 hit. PF02789. Peptidase_M17_N. 1 hit. [Graphical view]
PRINTS	PR00481. LAMNOPPTDASE.
PROSITE	PS00631. CYTOSOL_AP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

AMPA_ACISJ

Accession

Primary (citable) accession number: A1W776

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 14, 2009
Last sequence update:	February 6, 2007
Last modified:	November 3, 2009
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)