A1W6Q5 (A1W6Q5_ACISJ) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Lytic transglycosylase, catalytic EMBL ABM41930.1

Gene names

Ordered Locus Names:

Ajs_1742

Organism

Acidovorax sp. (strain JS42) [Complete proteome] [HAMAP]

Taxonomic identifier

232721 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Acidovorax

Protein attributes

Sequence length	504 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABM41930.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cell wall macromolecule catabolic process Inferred from electronic annotation. Source: InterPro peptidoglycan metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	membrane Inferred from electronic annotation. Source: InterPro
Molecular function	lytic transglycosylase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 28	28	Potential EMBL ABM41930.1
	Chain	29 – 504	476	Potential EMBL ABM41930.1		PRO_5000211864

Sequences

	Sequence		Length	Mass (Da)
	A1W6Q5 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: 7DDFF3B0D5DA8B53	FASTA	504	55,663
	10 20 30 40 50 60 MRLLHILGLA SLLWLTGCAT TAPTDNAAST TDPTTASHTP LYPSGPLQPI TASAASGHTV 70 80 90 100 110 120 AGVSAPADLW DRIRRGFSMP NLDTDLVRDR EQWYATRPDY MQRMTERSSK YLFHIVEELE 130 140 150 160 170 180 RRGMPTELAL LPYIESAFNP QAVSSAKAAG MWQFMPATGT YFDLKQNAFR DDRRDVLAST 190 200 210 220 230 240 RAALDYLQKL YGMFGDWHLA LAAYNWGEGS VARAIARNEK QGLGTRYTEL TMPAETRMYV 250 260 270 280 290 300 PKLQAVKNIV ANPDKFSTEL PLIENHPYFQ SVEITRDMDV TLVASLAGVR IEDFRALNPS 310 320 330 340 350 360 LHKPVILAAG MPQILLPWDN AQVFRKNLEA YTEGQYASWT VWTVPNTMSV STAAQRTGMS 370 380 390 400 410 420 ENDLRQVNGI PPRMMIKAGS ALMVPRAATM RADVPGHLAD NGQVSFTPEI VTRRTTVRAG 430 440 450 460 470 480 KRDTVASIAR RYKVSTADVA DWNDVKTSSK FKPGEQVVMY LPVRLAATSL ARTSAKQPIS 490 500 RATVRSAKAG APARKGGTPS KRKR

References

[1]

"Complete sequence of chromosome 1 of Acidovorax sp. JS42." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Kim E., Stahl D., Richardson P. Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000539 Genomic DNA. Translation: ABM41930.1.
RefSeq	YP_986006.1. NC_008782.1.
3D structure databases
ProteinModelPortal	A1W6Q5.
ModBase	Search...
Protein-protein interaction databases
STRING	A1W6Q5.
Protein family/group databases
CAZy	CBM50. Carbohydrate-Binding Module Family 50. GH23. Glycoside Hydrolase Family 23.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4670785.
GenomeReviews	Gene locus Ajs_1742 in contig CP000539_GR.
KEGG	ajs:Ajs_1742.
PATRIC	20688808. VBIAciSp27161_1940.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0741.
HOGENOM	HBG519241.
OMA	YAIAAYN.
PhylomeDB	A1W6Q5.
ProtClustDB	CLSK951207.
Family and domain databases
InterPro	IPR023346. Lysozyme-like_dom. IPR008258. Lytic_TGlycosylase-like_cat. IPR018392. Peptidoglycan-bd_lysin. IPR000189. Transglyc_AS. [Graphical view]
KO	K08307.
Pfam	PF01476. LysM. 1 hit. PF01464. SLT. 1 hit. [Graphical view]
SUPFAM	SSF53955. SSF53955. 1 hit.
PROSITE	PS00922. TRANSGLYCOSYLASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A1W6Q5_ACISJ

Accession

Primary (citable) accession number: A1W6Q5

Entry history

Integrated into UniProtKB/TrEMBL:	February 6, 2007
Last sequence update:	February 6, 2007
Last modified:	December 14, 2011
This is version 31 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)