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Protein

Probable D-serine dehydratase

Gene

dsdA

Organism
Polaromonas naphthalenivorans (strain CJ2)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

D-serine = pyruvate + NH3.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Ligandi

Pyridoxal phosphate

Enzyme and pathway databases

BioCyciPNAP365044:GJ8X-4829-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable D-serine dehydrataseUniRule annotation (EC:4.3.1.18UniRule annotation)
Alternative name(s):
D-serine deaminaseUniRule annotation
Short name:
DSDUniRule annotation
Gene namesi
Name:dsdAUniRule annotation
Ordered Locus Names:Pnap_4614
Encoded oniPlasmid pPNAP040 Publication
OrganismiPolaromonas naphthalenivorans (strain CJ2)
Taxonomic identifieri365044 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaePolaromonas
Proteomesi
  • UP000000644 Componenti: Plasmid pPNAP04

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 455455Probable D-serine dehydratasePRO_0000291736Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei119 – 1191N6-(pyridoxal phosphate)lysineUniRule annotation

Structurei

3D structure databases

ProteinModelPortaliA1VWK8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the serine/threonine dehydratase family. DsdA subfamily.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000218072.
KOiK01753.
OMAiESDPNCF.
OrthoDBiPOG091H0G2T.

Family and domain databases

HAMAPiMF_01030. D_Ser_dehydrat. 1 hit.
InterProiIPR011780. D_Ser_am_lyase.
IPR001926. TrpB-like_PLP-dep.
[Graphical view]
PANTHERiPTHR10314:SF9. PTHR10314:SF9. 2 hits.
PfamiPF00291. PALP. 1 hit.
[Graphical view]
SUPFAMiSSF53686. SSF53686. 1 hit.
TIGRFAMsiTIGR02035. D_Ser_am_lyase. 1 hit.

Sequencei

Sequence statusi: Complete.

A1VWK8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRSIQSPSSH AAEQESFFSL AALQVGLPLM WASPRPSPNL PDKEDSSIGS
60 70 80 90 100
ADVVRTGERL ARFAPLLAQL FPELEAAGGI IESDLLAAPR LQEALNMPAD
110 120 130 140 150
TGTLLVKADH ALPIAGSIKA RGGIHEVLEH AETLALQHGL LASHEADYRV
160 170 180 190 200
LAEPTARALF SRHQIAVGST GNLGLAIGVM AAALGFQAVV HMSADAKEWK
210 220 230 240 250
KERLRKRGVT VVEHAGDYAK AVAAGRAAAE ADPRCHFVDD ERSLSLLLGY
260 270 280 290 300
AAAAPRLARQ LVAQGRRVDA EHPLFVYLPC GVGGAPGGIA LGLSQIYGEH
310 320 330 340 350
VHCFFAEPTR SPCFLVQMLA GTPELAHLGA HPSVYDLGLD NRTEADGLAV
360 370 380 390 400
PRASVLAAEV VRPFLAGVYT VNDEALFRHL HLAATTEGFR IEPSAAACLP
410 420 430 440 450
GPAMLMGTAE GRAYLQREQL EHHMARSTHI AWTTGGLFVP DDEYARFRVR

GALTS
Length:455
Mass (Da):48,460
Last modified:February 6, 2007 - v1
Checksum:i03FEB2327E7F6927
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000533 Genomic DNA. Translation: ABM40036.1.
RefSeqiWP_011798407.1. NC_008760.1.

Genome annotation databases

EnsemblBacteriaiABM40036; ABM40036; Pnap_4614.
KEGGipna:Pnap_4614.
PATRICi22944020. VBIPolNap76733_0584.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000533 Genomic DNA. Translation: ABM40036.1.
RefSeqiWP_011798407.1. NC_008760.1.

3D structure databases

ProteinModelPortaliA1VWK8.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABM40036; ABM40036; Pnap_4614.
KEGGipna:Pnap_4614.
PATRICi22944020. VBIPolNap76733_0584.

Phylogenomic databases

HOGENOMiHOG000218072.
KOiK01753.
OMAiESDPNCF.
OrthoDBiPOG091H0G2T.

Enzyme and pathway databases

BioCyciPNAP365044:GJ8X-4829-MONOMER.

Family and domain databases

HAMAPiMF_01030. D_Ser_dehydrat. 1 hit.
InterProiIPR011780. D_Ser_am_lyase.
IPR001926. TrpB-like_PLP-dep.
[Graphical view]
PANTHERiPTHR10314:SF9. PTHR10314:SF9. 2 hits.
PfamiPF00291. PALP. 1 hit.
[Graphical view]
SUPFAMiSSF53686. SSF53686. 1 hit.
TIGRFAMsiTIGR02035. D_Ser_am_lyase. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiSDHD_POLNA
AccessioniPrimary (citable) accession number: A1VWK8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 26, 2007
Last sequence update: February 6, 2007
Last modified: September 7, 2016
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.