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Protein

Probable D-serine dehydratase

Gene

dsdA

Organism
Polaromonas naphthalenivorans (strain CJ2)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

D-serine = pyruvate + NH3.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLyase
LigandPyridoxal phosphate

Names & Taxonomyi

Protein namesi
Recommended name:
Probable D-serine dehydrataseUniRule annotation (EC:4.3.1.18UniRule annotation)
Alternative name(s):
D-serine deaminaseUniRule annotation
Short name:
DSDUniRule annotation
Gene namesi
Name:dsdAUniRule annotation
Ordered Locus Names:Pnap_4614
Encoded oniPlasmid pPNAP040 Publication
OrganismiPolaromonas naphthalenivorans (strain CJ2)
Taxonomic identifieri365044 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaePolaromonas
Proteomesi
  • UP000000644 Componenti: Plasmid pPNAP04

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002917361 – 455Probable D-serine dehydrataseAdd BLAST455

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei119N6-(pyridoxal phosphate)lysineUniRule annotation1

Proteomic databases

PRIDEiA1VWK8

Structurei

3D structure databases

ProteinModelPortaliA1VWK8
SMRiA1VWK8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the serine/threonine dehydratase family. DsdA subfamily.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000218072
KOiK01753
OMAiESDPNCF
OrthoDBiPOG091H0G2T

Family and domain databases

HAMAPiMF_01030 D_Ser_dehydrat, 1 hit
InterProiView protein in InterPro
IPR011780 D_Ser_am_lyase
IPR001926 PLP-dep
IPR036052 Trypto_synt_PLP_dependent
PANTHERiPTHR43419:SF2 PTHR43419:SF2, 1 hit
PfamiView protein in Pfam
PF00291 PALP, 1 hit
SUPFAMiSSF53686 SSF53686, 1 hit
TIGRFAMsiTIGR02035 D_Ser_am_lyase, 1 hit

Sequencei

Sequence statusi: Complete.

A1VWK8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRSIQSPSSH AAEQESFFSL AALQVGLPLM WASPRPSPNL PDKEDSSIGS
60 70 80 90 100
ADVVRTGERL ARFAPLLAQL FPELEAAGGI IESDLLAAPR LQEALNMPAD
110 120 130 140 150
TGTLLVKADH ALPIAGSIKA RGGIHEVLEH AETLALQHGL LASHEADYRV
160 170 180 190 200
LAEPTARALF SRHQIAVGST GNLGLAIGVM AAALGFQAVV HMSADAKEWK
210 220 230 240 250
KERLRKRGVT VVEHAGDYAK AVAAGRAAAE ADPRCHFVDD ERSLSLLLGY
260 270 280 290 300
AAAAPRLARQ LVAQGRRVDA EHPLFVYLPC GVGGAPGGIA LGLSQIYGEH
310 320 330 340 350
VHCFFAEPTR SPCFLVQMLA GTPELAHLGA HPSVYDLGLD NRTEADGLAV
360 370 380 390 400
PRASVLAAEV VRPFLAGVYT VNDEALFRHL HLAATTEGFR IEPSAAACLP
410 420 430 440 450
GPAMLMGTAE GRAYLQREQL EHHMARSTHI AWTTGGLFVP DDEYARFRVR

GALTS
Length:455
Mass (Da):48,460
Last modified:February 6, 2007 - v1
Checksum:i03FEB2327E7F6927
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000533 Genomic DNA Translation: ABM40036.1
RefSeqiWP_011798407.1, NC_008760.1

Genome annotation databases

EnsemblBacteriaiABM40036; ABM40036; Pnap_4614
KEGGipna:Pnap_4614

Similar proteinsi

Entry informationi

Entry nameiSDHD_POLNA
AccessioniPrimary (citable) accession number: A1VWK8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 26, 2007
Last sequence update: February 6, 2007
Last modified: May 23, 2018
This is version 60 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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