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A1VTK1 (A1VTK1_POLNA) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Malate synthase G RuleBase RU003572 HAMAP MF_00641
EC=2.3.3.9 RuleBase RU003572 HAMAP MF_00641
Gene names
Name:glcB HAMAP MF_00641
Ordered Locus Names:Pnap_3683
OrganismPolaromonas naphthalenivorans (strain CJ2) [Complete proteome] [HAMAP]
Taxonomic identifier365044 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Polaromonas

Protein attributes

Sequence length730 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Acetyl-CoA + H2O + glyoxylate = (S)-malate + CoA. RuleBase RU003572 HAMAP MF_00641 SAAS SAAS006253

Pathway

Carbohydrate metabolism; glyoxylate cycle; (S)-malate from isocitrate: step 2/2. RuleBase RU003572 HAMAP MF_00641 SAAS SAAS006253

Subunit structure

Monomer By similarity. HAMAP MF_00641 SAAS SAAS006253

Subcellular location

Cytoplasm By similarity RuleBase RU003572 HAMAP MF_00641.

Sequence similarities

Belongs to the malate synthase family. GlcB subfamily. RuleBase RU003572 HAMAP MF_00641

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site3391Proton acceptor By similarity HAMAP MF_00641
Active site6371Proton donor By similarity HAMAP MF_00641

Sequences

Sequence LengthMass (Da)Tools
A1VTK1 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: 736DFBBC637F8026

FASTA73078,349
        10         20         30         40         50         60 
MTERTTRHSL QVATELYRFI EDKVLPGTGV DSDKFWSGFD AIVADLAPKN IALLAERDRL 

        70         80         90        100        110        120 
QLEMDAWHKA NPGPIADMPA YRAFLESIGY LVPQPETVAV TTANVDAELA VQAGPQLVVP 

       130        140        150        160        170        180 
VLNARYALNA ANARWGSLYD ALYGTDAIPE TDGAEKGKGY NPVRGAKVIA FARNLLDQAA 

       190        200        210        220        230        240 
PLSTGSHKDA TGYSIEGGQL VVTQASGMSG LQDPAQLVGY RGDAAAPSSV LLVHNGLHID 

       250        260        270        280        290        300 
IIIDRATTLG KSDAAGISDM VIESALSTIL DLEDSVAVVD AEDKVLAYGN WLGILQGTLT 

       310        320        330        340        350        360 
EEVSKGGTTF TRGLNPDRVY TAADGGEVTL HGRSLMFVRN VGHLMTNPAI LYAGGKEIPE 

       370        380        390        400        410        420 
GIMDAVVTTT IAIHDFKRQG QPGIKNSRTG SVYIVKPKMH GPAEVAFAAE LFGRVEALLG 

       430        440        450        460        470        480 
LPANTVKLGI MDEERRTSVN LKACIAEAEA RVAFINTGFL DRTGDEMHTA MQAGPMIRKG 

       490        500        510        520        530        540 
DMKTSAWIAA YEKNNVLVGL SCGLRGKAQI GKGMWAMPDL MAAMLEQKIG HPKAGANTAW 

       550        560        570        580        590        600 
VPSPTAATLH ALHYHQVLVS DVQKELEKID ANAERGNLLN GLLQIPVTAT PNWSDAEKQQ 

       610        620        630        640        650        660 
ELDNNAQGIL GYVVRWIDQG VGCSKVPDIH NIALMEDRAT LRISSQHMAN WLHHGVVTEA 

       670        680        690        700        710        720 
QVKETFERMA AVVDGQNAGD PLYKNMAGHF DTSAAYKAAC DLVFKGLEQP SGYTEPLLHA 

       730 
WRLKVKAGTA

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References

[1]"Complete sequence of chromosome 1 of Polaromonas naphthalenivorans CJ2."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D.R., Brettin T., Bruce D., Han C., Tapia R., Brainard J., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Madsen E.L., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CJ2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000529 Genomic DNA. Translation: ABM38979.1.
RefSeqYP_983900.1. NC_008781.1.

3D structure databases

ProteinModelPortalA1VTK1.
SMRA1VTK1. Positions 1-726.
ModBaseSearch...

Protein-protein interaction databases

STRINGA1VTK1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4686850.
GenomeReviewsGene locus Pnap_3683 in contig CP000529_GR.
KEGGpna:Pnap_3683.
PATRIC22952119. VBIPolNap76733_4575.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2225.
HOGENOMHBG350005.
OMAIQIDAND.
PhylomeDBA1VTK1.
ProtClustDBPRK02999.

Enzyme and pathway databases

BioCycPNAP365044:PNAP_3683-MONOMER.

Family and domain databases

HAMAPMF_00641. Malate_synth_G.
[Tree]
InterProIPR011076. Malate_synth-like.
IPR023310. Malate_synth_G_beta_sub_dom.
IPR001465. Malate_synthase.
IPR006253. Malate_synthG.
[Graphical view]
Gene3DG3DSA:2.170.170.11. Malate_synth_G_beta_sub_dom. 2 hits.
KOK01638.
PANTHERPTHR21631:SF1. Malate_synthase. 1 hit.
PfamPF01274. Malate_synthase. 1 hit.
[Graphical view]
SUPFAMSSF51645. Malat_synth_like. 1 hit.
TIGRFAMsTIGR01345. Malate_syn_G. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA1VTK1_POLNA
AccessionPrimary (citable) accession number: A1VTK1
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: December 14, 2011
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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