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A1VMA3

- A1VMA3_POLNA

UniProt

A1VMA3 - A1VMA3_POLNA

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Protein

Putative ribosome biogenesis GTPase RsgA

Gene
rsgA, Pnap_1467
Organism
Polaromonas naphthalenivorans (strain CJ2)
Status
Unreviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover By similarity.UniRule annotationSAAS annotations

Cofactori

Binds 1 zinc ion per subunit By similarity.UniRule annotationSAAS annotations

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi254 – 2541Zinc By similarityUniRule annotation
Metal bindingi259 – 2591Zinc By similarityUniRule annotation
Metal bindingi261 – 2611Zinc By similarityUniRule annotation
Metal bindingi267 – 2671Zinc By similarityUniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi110 – 1134GTP By similarityUniRule annotation
Nucleotide bindingi170 – 1789GTP By similarityUniRule annotation

GO - Molecular functioni

  1. GTPase activity Source: UniProtKB-HAMAP
  2. GTP binding Source: UniProtKB-HAMAP
  3. metal ion binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

HydrolaseUniRule annotationSAAS annotations

Keywords - Ligandi

GTP-bindingUniRule annotationSAAS annotations, Metal-bindingUniRule annotationSAAS annotations, Nucleotide-binding, ZincUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciPNAP365044:GJ8X-1487-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative ribosome biogenesis GTPase RsgAUniRule annotation (EC:3.6.1.-UniRule annotation)
Gene namesi
Name:rsgAUniRule annotation
Ordered Locus Names:Pnap_1467Imported
OrganismiPolaromonas naphthalenivorans (strain CJ2)Imported
Taxonomic identifieri365044 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaePolaromonas
ProteomesiUP000000644: Chromosome

Interactioni

Subunit structurei

Monomer By similarity. Associates with ribosomes.SAAS annotations
Monomer. Associates with ribosomes By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi365044.Pnap_1467.

Structurei

3D structure databases

ProteinModelPortaliA1VMA3.

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi254 – 26714Knuckle-like cysteine cluster By similarityUniRule annotationAdd
BLAST

Sequence similaritiesi

Contains engC GTPase domain.SAAS annotations

Phylogenomic databases

eggNOGiCOG1162.
HOGENOMiHOG000006957.
KOiK06949.
OMAiAQTREIS.
OrthoDBiEOG69SKDD.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
3.40.50.300. 1 hit.
HAMAPiMF_01820. GTPase_RsgA.
InterProiIPR010914. EngC_GTPase.
IPR012340. NA-bd_OB-fold.
IPR027417. P-loop_NTPase.
IPR004881. Ribosome_biogen_GTPase_RsgA.
[Graphical view]
PfamiPF03193. DUF258. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00157. TIGR00157. 1 hit.
PROSITEiPS50936. ENGC_GTPASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A1VMA3-1 [UniParc]FASTAAdd to Basket

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MVVAGFGRHV LVETESGQRL ICHPRGKKSQ VVVGDRIRWL PSQDEGTIEK    50
IEERSNLFYR QDEMRTKSFA ANLDQILILI AAEPEFSESQ LTRALIAAEA 100
ERIKPIIALN KSDLAEPFGR AWTKLAPYRA MGYQVLPLAI KPKTAAAPAN 150
DGQTAELMAL LHGKKTLVLG PSGAGKSSLT NLLVPQAKVL TAEISQALNS 200
GKHTTTSTTL YWVDEARTTA LIDSPGFQEF GLHHIDPMQL ANYMPDFKAH 250
AQDCKFYNCT HLHEPGCGVI SEVKSTVSAS SISANRYRLY SELFAELSQT 300
RY 302
Length:302
Mass (Da):33,313
Last modified:February 6, 2007 - v1
Checksum:i79B7B89F2939C4D9
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000529 Genomic DNA. Translation: ABM36781.1.
RefSeqiWP_011800868.1. NC_008781.1.
YP_981702.1. NC_008781.1.

Genome annotation databases

EnsemblBacteriaiABM36781; ABM36781; Pnap_1467.
GeneIDi4686513.
KEGGipna:Pnap_1467.
PATRICi22947541. VBIPolNap76733_2320.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000529 Genomic DNA. Translation: ABM36781.1 .
RefSeqi WP_011800868.1. NC_008781.1.
YP_981702.1. NC_008781.1.

3D structure databases

ProteinModelPortali A1VMA3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 365044.Pnap_1467.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABM36781 ; ABM36781 ; Pnap_1467 .
GeneIDi 4686513.
KEGGi pna:Pnap_1467.
PATRICi 22947541. VBIPolNap76733_2320.

Phylogenomic databases

eggNOGi COG1162.
HOGENOMi HOG000006957.
KOi K06949.
OMAi AQTREIS.
OrthoDBi EOG69SKDD.

Enzyme and pathway databases

BioCyci PNAP365044:GJ8X-1487-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
3.40.50.300. 1 hit.
HAMAPi MF_01820. GTPase_RsgA.
InterProi IPR010914. EngC_GTPase.
IPR012340. NA-bd_OB-fold.
IPR027417. P-loop_NTPase.
IPR004881. Ribosome_biogen_GTPase_RsgA.
[Graphical view ]
Pfami PF03193. DUF258. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsi TIGR00157. TIGR00157. 1 hit.
PROSITEi PS50936. ENGC_GTPASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CJ2.

Entry informationi

Entry nameiA1VMA3_POLNA
AccessioniPrimary (citable) accession number: A1VMA3
Entry historyi
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: September 3, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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