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A1VMA3

- A1VMA3_POLNA

UniProt

A1VMA3 - A1VMA3_POLNA

Protein

Putative ribosome biogenesis GTPase RsgA

Gene

rsgA

Organism
Polaromonas naphthalenivorans (strain CJ2)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 58 (01 Oct 2014)
      Sequence version 1 (06 Feb 2007)
      Previous versions | rss
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    Functioni

    May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover.UniRule annotationSAAS annotation

    Cofactori

    Binds 1 zinc ion per subunit.UniRule annotationSAAS annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi254 – 2541ZincUniRule annotation
    Metal bindingi259 – 2591ZincUniRule annotation
    Metal bindingi261 – 2611ZincUniRule annotation
    Metal bindingi267 – 2671ZincUniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi110 – 1134GTPUniRule annotation
    Nucleotide bindingi170 – 1789GTPUniRule annotation

    GO - Molecular functioni

    1. GTPase activity Source: UniProtKB-HAMAP
    2. GTP binding Source: UniProtKB-HAMAP
    3. metal ion binding Source: UniProtKB-KW

    Keywords - Molecular functioni

    HydrolaseUniRule annotationSAAS annotation

    Keywords - Ligandi

    GTP-bindingUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation, Nucleotide-binding, ZincUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciPNAP365044:GJ8X-1487-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative ribosome biogenesis GTPase RsgAUniRule annotation (EC:3.6.1.-UniRule annotation)
    Gene namesi
    Name:rsgAUniRule annotation
    Ordered Locus Names:Pnap_1467Imported
    OrganismiPolaromonas naphthalenivorans (strain CJ2)Imported
    Taxonomic identifieri365044 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaePolaromonas
    ProteomesiUP000000644: Chromosome

    Interactioni

    Subunit structurei

    Monomer By similarity. Associates with ribosomes.SAAS annotation
    Monomer. Associates with ribosomes.UniRule annotation

    Protein-protein interaction databases

    STRINGi365044.Pnap_1467.

    Structurei

    3D structure databases

    ProteinModelPortaliA1VMA3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Motif

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Motifi254 – 26714Knuckle-like cysteine clusterUniRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.UniRule annotation
    Contains CP-type G (guanine nucleotide-binding) domain.SAAS annotation

    Phylogenomic databases

    eggNOGiCOG1162.
    HOGENOMiHOG000006957.
    KOiK06949.
    OMAiAQTREIS.
    OrthoDBiEOG69SKDD.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    3.40.50.300. 1 hit.
    HAMAPiMF_01820. GTPase_RsgA.
    InterProiIPR010914. EngC_GTPase.
    IPR012340. NA-bd_OB-fold.
    IPR027417. P-loop_NTPase.
    IPR004881. Ribosome_biogen_GTPase_RsgA.
    [Graphical view]
    PfamiPF03193. DUF258. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsiTIGR00157. TIGR00157. 1 hit.
    PROSITEiPS50936. ENGC_GTPASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A1VMA3-1 [UniParc]FASTAAdd to Basket

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    MVVAGFGRHV LVETESGQRL ICHPRGKKSQ VVVGDRIRWL PSQDEGTIEK    50
    IEERSNLFYR QDEMRTKSFA ANLDQILILI AAEPEFSESQ LTRALIAAEA 100
    ERIKPIIALN KSDLAEPFGR AWTKLAPYRA MGYQVLPLAI KPKTAAAPAN 150
    DGQTAELMAL LHGKKTLVLG PSGAGKSSLT NLLVPQAKVL TAEISQALNS 200
    GKHTTTSTTL YWVDEARTTA LIDSPGFQEF GLHHIDPMQL ANYMPDFKAH 250
    AQDCKFYNCT HLHEPGCGVI SEVKSTVSAS SISANRYRLY SELFAELSQT 300
    RY 302
    Length:302
    Mass (Da):33,313
    Last modified:February 6, 2007 - v1
    Checksum:i79B7B89F2939C4D9
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000529 Genomic DNA. Translation: ABM36781.1.
    RefSeqiWP_011800868.1. NC_008781.1.
    YP_981702.1. NC_008781.1.

    Genome annotation databases

    EnsemblBacteriaiABM36781; ABM36781; Pnap_1467.
    GeneIDi4686513.
    KEGGipna:Pnap_1467.
    PATRICi22947541. VBIPolNap76733_2320.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000529 Genomic DNA. Translation: ABM36781.1 .
    RefSeqi WP_011800868.1. NC_008781.1.
    YP_981702.1. NC_008781.1.

    3D structure databases

    ProteinModelPortali A1VMA3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 365044.Pnap_1467.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABM36781 ; ABM36781 ; Pnap_1467 .
    GeneIDi 4686513.
    KEGGi pna:Pnap_1467.
    PATRICi 22947541. VBIPolNap76733_2320.

    Phylogenomic databases

    eggNOGi COG1162.
    HOGENOMi HOG000006957.
    KOi K06949.
    OMAi AQTREIS.
    OrthoDBi EOG69SKDD.

    Enzyme and pathway databases

    BioCyci PNAP365044:GJ8X-1487-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    3.40.50.300. 1 hit.
    HAMAPi MF_01820. GTPase_RsgA.
    InterProi IPR010914. EngC_GTPase.
    IPR012340. NA-bd_OB-fold.
    IPR027417. P-loop_NTPase.
    IPR004881. Ribosome_biogen_GTPase_RsgA.
    [Graphical view ]
    Pfami PF03193. DUF258. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    SSF52540. SSF52540. 1 hit.
    TIGRFAMsi TIGR00157. TIGR00157. 1 hit.
    PROSITEi PS50936. ENGC_GTPASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CJ2Imported.

    Entry informationi

    Entry nameiA1VMA3_POLNA
    AccessioniPrimary (citable) accession number: A1VMA3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 6, 2007
    Last sequence update: February 6, 2007
    Last modified: October 1, 2014
    This is version 58 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3