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A1VMA3 (A1VMA3_POLNA) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Putative ribosome biogenesis GTPase RsgA HAMAP-Rule MF_01820

EC=3.6.1.- HAMAP-Rule MF_01820
Gene names
Name:rsgA HAMAP-Rule MF_01820
Ordered Locus Names:Pnap_1467 EMBL ABM36781.1
OrganismPolaromonas naphthalenivorans (strain CJ2) [Complete proteome] [HAMAP] EMBL ABM36781.1
Taxonomic identifier365044 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaePolaromonas

Protein attributes

Sequence length302 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover By similarity. HAMAP-Rule MF_01820 SAAS SAAS004881

Cofactor

Binds 1 zinc ion per subunit By similarity. HAMAP-Rule MF_01820 SAAS SAAS004881

Subunit structure

Monomer By similarity. Associates with ribosomes. SAAS SAAS004881

Monomer. Associates with ribosomes By similarity. HAMAP-Rule MF_01820

Sequence similarities

Belongs to the RsgA GTPase family. HAMAP-Rule MF_01820

Contains 1 engC GTPase domain. HAMAP-Rule MF_01820

Contains engC GTPase domain. SAAS SAAS004881

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Domain71 – 228158EngC GTPase By similarity HAMAP-Rule MF_01820
Nucleotide binding110 – 1134GTP By similarity HAMAP-Rule MF_01820
Nucleotide binding170 – 1789GTP By similarity HAMAP-Rule MF_01820
Motif254 – 26714Knuckle-like cysteine cluster By similarity HAMAP-Rule MF_01820

Sites

Metal binding2541Zinc By similarity HAMAP-Rule MF_01820
Metal binding2591Zinc By similarity HAMAP-Rule MF_01820
Metal binding2611Zinc By similarity HAMAP-Rule MF_01820
Metal binding2671Zinc By similarity HAMAP-Rule MF_01820

Sequences

Sequence LengthMass (Da)Tools
A1VMA3 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: 79B7B89F2939C4D9

FASTA30233,313
        10         20         30         40         50         60 
MVVAGFGRHV LVETESGQRL ICHPRGKKSQ VVVGDRIRWL PSQDEGTIEK IEERSNLFYR 

        70         80         90        100        110        120 
QDEMRTKSFA ANLDQILILI AAEPEFSESQ LTRALIAAEA ERIKPIIALN KSDLAEPFGR 

       130        140        150        160        170        180 
AWTKLAPYRA MGYQVLPLAI KPKTAAAPAN DGQTAELMAL LHGKKTLVLG PSGAGKSSLT 

       190        200        210        220        230        240 
NLLVPQAKVL TAEISQALNS GKHTTTSTTL YWVDEARTTA LIDSPGFQEF GLHHIDPMQL 

       250        260        270        280        290        300 
ANYMPDFKAH AQDCKFYNCT HLHEPGCGVI SEVKSTVSAS SISANRYRLY SELFAELSQT 


RY 

« Hide

References

[1]"Complete sequence of chromosome 1 of Polaromonas naphthalenivorans CJ2."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D.R., Brettin T., Bruce D., Han C., Tapia R., Brainard J., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Madsen E.L., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CJ2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000529 Genomic DNA. Translation: ABM36781.1.
RefSeqYP_981702.1. NC_008781.1.

3D structure databases

ProteinModelPortalA1VMA3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING365044.Pnap_1467.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABM36781; ABM36781; Pnap_1467.
GeneID4686513.
KEGGpna:Pnap_1467.
PATRIC22947541. VBIPolNap76733_2320.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1162.
HOGENOMHOG000006957.
KOK06949.
OMALARCNIR.
OrthoDBEOG69SKDD.

Enzyme and pathway databases

BioCycPNAP365044:GJ8X-1487-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
3.40.50.300. 1 hit.
HAMAPMF_01820. GTPase_RsgA.
InterProIPR010914. EngC_GTPase.
IPR012340. NA-bd_OB-fold.
IPR027417. P-loop_NTPase.
IPR004881. Ribosome_biogen_GTPase_RsgA.
[Graphical view]
PfamPF03193. DUF258. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00157. TIGR00157. 1 hit.
PROSITEPS50936. ENGC_GTPASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA1VMA3_POLNA
AccessionPrimary (citable) accession number: A1VMA3
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: April 16, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)