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A1VIX6 (A1VIX6_POLNA) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Alanine racemase domain protein EMBL ABM35604.1
Gene names
Ordered Locus Names:Pnap_0280
OrganismPolaromonas naphthalenivorans (strain CJ2) [Complete proteome] [HAMAP]
Taxonomic identifier365044 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Polaromonas

Protein attributes

Sequence length259 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. PIRSR PIRSR004848-1

Sequence similarities

Belongs to the UPF0001 family. RuleBase RU004514

Ontologies

Keywords
   LigandPyridoxal phosphate PIRSR PIRSR004848-1
   Technical termComplete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Amino acid modifications

Modified residue521N6-(pyridoxal phosphate)lysine By similarity PIRSR PIRSR004848-1

Sequences

Sequence LengthMass (Da)Tools
A1VIX6 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: 2E3758F075A944ED

FASTA25927,221
        10         20         30         40         50         60 
MRSTVGIPCL KAGEDVKTTI AHHLRLVHDR INVACLAAGR DPCGVRLLAV SKTFGADAVA 

        70         80         90        100        110        120 
DAVAAGQQAF GENYIAEGVE KILALRRWQA EEAARSGVAA AALEWHCIGP IQSNKTRPVA 

       130        140        150        160        170        180 
EHFDWVQSVD RLKIAQRLSE QRPPGLAPLQ ICLQVNIDGG ANKSGLAPED VLALAEEVAR 

       190        200        210        220        230        240 
LPRLVLRGLM AIPEPAIDFV AACAIHASAK AIFDHINAAG VLAVPMDTLS LGMTADLEAA 

       250 
IHAGSTMVRV GTAIFGGRG

« Hide

References

[1]"Complete sequence of chromosome 1 of Polaromonas naphthalenivorans CJ2."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D.R., Brettin T., Bruce D., Han C., Tapia R., Brainard J., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Madsen E.L., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CJ2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000529 Genomic DNA. Translation: ABM35604.1.
RefSeqYP_980525.1. NC_008781.1.

3D structure databases

ProteinModelPortalA1VIX6.
ModBaseSearch...

Protein-protein interaction databases

STRINGA1VIX6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4687274.
GenomeReviewsGene locus Pnap_0280 in contig CP000529_GR.
KEGGpna:Pnap_0280.
PATRIC22945053. VBIPolNap76733_1096.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0325.
HOGENOMHBG289671.
OMAHGSTMVR.
PhylomeDBA1VIX6.
ProtClustDBCLSK723182.

Enzyme and pathway databases

BioCycPNAP365044:PNAP_0280-MONOMER.

Family and domain databases

InterProIPR001608. Ala_racemase_N.
IPR011078. UPF0001.
[Graphical view]
KOK06997.
PANTHERPTHR10146. PP_YBL036C. 1 hit.
PfamPF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PIRSFPIRSF004848. YBL036c_PLPDEIII. 1 hit.
TIGRFAMsTIGR00044. TIGR00044. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA1VIX6_POLNA
AccessionPrimary (citable) accession number: A1VIX6
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: December 14, 2011
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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