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Reviewed, UniProtKB/Swiss-Prot A1VE87 (SELD_DESVV)

Last modified February 9, 2010. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Selenide, water dikinase
    EC=2.7.9.3
Alternative name(s):
    Selenophosphate synthetase
    Selenium donor protein
Gene names
Name: selD
Ordered Locus Names: Dvul_1736
OrganismDesulfovibrio vulgaris subsp. vulgaris (strain DP4) [Complete proteome] [HAMAP]
Taxonomic identifier391774 [NCBI]
Taxonomic lineageBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio

Protein attributes

Sequence length351 AA.
Sequence statusComplete.
Protein existenceInferred from homology.

General annotation (Comments)

Function

Synthesizes selenophosphate from selenide and ATP By similarity. HAMAP MF_00625

Catalytic activity

ATP + selenide + H2O = AMP + selenophosphate + phosphate. HAMAP MF_00625

Cofactor

Magnesium By similarity. HAMAP MF_00625

Sequence similarities

Belongs to the selenophosphate synthetase 1 family. Class I subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 351351Selenide, water dikinase HAMAP MF_00625
PRO_1000051597

Regions

Nucleotide binding230 – 2367ATP Potential

Sites

Active site151 Potential
Site181Important for catalytic activity By similarity

Amino acid modifications

Non-standard residue151Selenocysteine Potential

Sequences

Sequence LengthMass (Da)Tools
A1VE87-1 [UniParc].

Last modified February 26, 2008. Version 2.
Checksum: 870387A5C50B252D

FASTA35136,977
        10         20         30         40         50         60 
MTVDRLTSRS RAAGUAAKIA PGDLERILAT LPRDPREGER VVVGTRDNED AAIVRVPGGK 

        70         80         90        100        110        120 
AIVQTLDFFT PIVDDPYLFG QIAAANALSD VYAMGGEPWC ALNIVCFPVK ELPEEILADI 

       130        140        150        160        170        180 
LRGGADKVRE AGAVLVGGHS IEDESIKYGL SVTGIIDPDC YATNTGLRPG DVLLLTKPLG 

       190        200        210        220        230        240 
SGVLATAVKA GWDGFEAHEQ ELGRWGAMLN RAGGRVIREL GLAAATDVTG FGLGGHLLEM 

       250        260        270        280        290        300 
ANASNMSVHV DVSTLPLMPA VLDLVATGLL PAGSHANRHF CSGNVSVHPE VDSLLVDIVF 

       310        320        330        340        350 
DAQTSGGLIL AVPPHLVDDA CSILRAEDAP FWRIGHVEEM GEGVSRLVLQ P 

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References

[1]"Complete sequence of chromosome 1 of Desulfovibrio vulgaris subsp. vulgaris DP4."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Lykidis A., Walker C., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000527 Genomic DNA. Translation: ABM28753.1.
RefSeqYP_967180.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGA1VE87.

Genome annotation databases

GeneID4663192.
GenomeReviewsGene locus Dvul_1736 in contig CP000527_GR.
KEGGdvl:Dvul_1736.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0709.
HOGENOMHBG383791.
OMAGGHTVED.

Family and domain databases

HAMAPMF_00625. SelD.
[Tree]
InterProIPR000728. AIR_synth.
IPR010918. AIR_synth_C.
IPR016188. PurM_N-like.
IPR004536. SelD.
[Graphical view]
PfamPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]
PIRSFPIRSF036407. Selenphspht_syn. 1 hit.
TIGRFAMsTIGR00476. selD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameSELD_DESVV
AccessionPrimary (citable) accession number: A1VE87
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: February 26, 2008
Last modified: February 9, 2010
This is version 21 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents