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Protein

Selenide, water dikinase

Gene

selD

Organism
Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Synthesizes selenophosphate from selenide and ATP.UniRule annotation

Catalytic activityi

ATP + selenide + H2O = AMP + selenophosphate + phosphate.UniRule annotation

Cofactori

Mg2+UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei15 – 151UniRule annotation
Sitei18 – 181Important for catalytic activityUniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi230 – 2367ATPUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Kinase, Transferase

Keywords - Ligandi

ATP-binding, Magnesium, Nucleotide-binding, Selenium

Enzyme and pathway databases

BioCyciDVUL391774:GHS0-1792-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Selenide, water dikinaseUniRule annotation (EC:2.7.9.3UniRule annotation)
Alternative name(s):
Selenium donor proteinUniRule annotation
Selenophosphate synthaseUniRule annotation
Gene namesi
Name:selDUniRule annotation
Ordered Locus Names:Dvul_1736
OrganismiDesulfovibrio vulgaris subsp. vulgaris (strain DP4)
Taxonomic identifieri391774 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
Proteomesi
  • UP000009173 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 351351Selenide, water dikinasePRO_1000051597Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliA1VE87.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the selenophosphate synthase 1 family. Class I subfamily.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000219299.
KOiK01008.
OMAiCEMALGA.
OrthoDBiEOG6VF32H.

Family and domain databases

Gene3Di3.30.1330.10. 1 hit.
3.90.650.10. 1 hit.
HAMAPiMF_00625. SelD.
InterProiIPR010918. AIR_synth_C_dom.
IPR016188. PurM-like_N.
IPR023061. SelD_I.
IPR004536. SPS/SelD.
[Graphical view]
PfamiPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]
PIRSFiPIRSF036407. Selenphspht_syn. 1 hit.
SUPFAMiSSF56042. SSF56042. 1 hit.
TIGRFAMsiTIGR00476. selD. 1 hit.

Sequencei

Sequence statusi: Complete.

A1VE87-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVDRLTSRS RAAGUAAKIA PGDLERILAT LPRDPREGER VVVGTRDNED
60 70 80 90 100
AAIVRVPGGK AIVQTLDFFT PIVDDPYLFG QIAAANALSD VYAMGGEPWC
110 120 130 140 150
ALNIVCFPVK ELPEEILADI LRGGADKVRE AGAVLVGGHS IEDESIKYGL
160 170 180 190 200
SVTGIIDPDC YATNTGLRPG DVLLLTKPLG SGVLATAVKA GWDGFEAHEQ
210 220 230 240 250
ELGRWGAMLN RAGGRVIREL GLAAATDVTG FGLGGHLLEM ANASNMSVHV
260 270 280 290 300
DVSTLPLMPA VLDLVATGLL PAGSHANRHF CSGNVSVHPE VDSLLVDIVF
310 320 330 340 350
DAQTSGGLIL AVPPHLVDDA CSILRAEDAP FWRIGHVEEM GEGVSRLVLQ

P
Length:351
Mass (Da):36,977
Last modified:February 26, 2008 - v2
Checksum:i870387A5C50B252D
GO

Non-standard residue

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-standard residuei15 – 151SelenocysteineSequence analysis

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000527 Genomic DNA. Translation: ABM28753.1.

Genome annotation databases

EnsemblBacteriaiABM28753; ABM28753; Dvul_1736.
KEGGidvl:Dvul_1736.
PATRICi21767348. VBIDesVul62463_1948.

Keywords - Coding sequence diversityi

Selenocysteine

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000527 Genomic DNA. Translation: ABM28753.1.

3D structure databases

ProteinModelPortaliA1VE87.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABM28753; ABM28753; Dvul_1736.
KEGGidvl:Dvul_1736.
PATRICi21767348. VBIDesVul62463_1948.

Phylogenomic databases

HOGENOMiHOG000219299.
KOiK01008.
OMAiCEMALGA.
OrthoDBiEOG6VF32H.

Enzyme and pathway databases

BioCyciDVUL391774:GHS0-1792-MONOMER.

Family and domain databases

Gene3Di3.30.1330.10. 1 hit.
3.90.650.10. 1 hit.
HAMAPiMF_00625. SelD.
InterProiIPR010918. AIR_synth_C_dom.
IPR016188. PurM-like_N.
IPR023061. SelD_I.
IPR004536. SPS/SelD.
[Graphical view]
PfamiPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]
PIRSFiPIRSF036407. Selenphspht_syn. 1 hit.
SUPFAMiSSF56042. SSF56042. 1 hit.
TIGRFAMsiTIGR00476. selD. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DP4.

Entry informationi

Entry nameiSELD_DESVV
AccessioniPrimary (citable) accession number: A1VE87
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: February 26, 2008
Last modified: November 11, 2015
This is version 59 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.