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A1VE87 (SELD_DESVV) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Selenide, water dikinase
EC=2.7.9.3
Alternative name(s):
Selenium donor protein
Selenophosphate synthase
Gene names
Name:selD
Ordered Locus Names:Dvul_1736
OrganismDesulfovibrio vulgaris subsp. vulgaris (strain DP4) [Complete proteome] [HAMAP]
Taxonomic identifier391774 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Deltaproteobacteria › Desulfovibrionales › Desulfovibrionaceae › Desulfovibrio

Protein attributes

Sequence length351 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Synthesizes selenophosphate from selenide and ATP By similarity. HAMAP MF_00625

Catalytic activity

ATP + selenide + H2O = AMP + selenophosphate + phosphate. HAMAP MF_00625

Cofactor

Magnesium By similarity. HAMAP MF_00625

Sequence similarities

Belongs to the selenophosphate synthase 1 family. Class I subfamily.

Ontologies

Keywords
   Coding sequence diversitySelenocysteine
   LigandATP-binding
Magnesium
Nucleotide-binding
Selenium
   Molecular functionKinase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

selenide, water dikinase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 351351Selenide, water dikinase HAMAP MF_00625
PRO_1000051597

Regions

Nucleotide binding230 – 2367ATP Potential

Sites

Active site151 Potential
Site181Important for catalytic activity By similarity

Amino acid modifications

Non-standard residue151Selenocysteine Potential

Sequences

Sequence LengthMass (Da)Tools
A1VE87 [UniParc].

Last modified February 26, 2008. Version 2.
Checksum: 870387A5C50B252D

FASTA35136,977
        10         20         30         40         50         60 
MTVDRLTSRS RAAGUAAKIA PGDLERILAT LPRDPREGER VVVGTRDNED AAIVRVPGGK 

        70         80         90        100        110        120 
AIVQTLDFFT PIVDDPYLFG QIAAANALSD VYAMGGEPWC ALNIVCFPVK ELPEEILADI 

       130        140        150        160        170        180 
LRGGADKVRE AGAVLVGGHS IEDESIKYGL SVTGIIDPDC YATNTGLRPG DVLLLTKPLG 

       190        200        210        220        230        240 
SGVLATAVKA GWDGFEAHEQ ELGRWGAMLN RAGGRVIREL GLAAATDVTG FGLGGHLLEM 

       250        260        270        280        290        300 
ANASNMSVHV DVSTLPLMPA VLDLVATGLL PAGSHANRHF CSGNVSVHPE VDSLLVDIVF 

       310        320        330        340        350 
DAQTSGGLIL AVPPHLVDDA CSILRAEDAP FWRIGHVEEM GEGVSRLVLQ P

« Hide

References

[1]"Contribution of mobile genetic elements to Desulfovibrio vulgaris genome plasticity."
Walker C.B., Stolyar S., Chivian D., Pinel N., Gabster J.A., Dehal P.S., He Z., Yang Z.K., Yen H.C., Zhou J., Wall J.D., Hazen T.C., Arkin A.P., Stahl D.A.
Environ. Microbiol. 11:2244-2252(2009) [PubMed: 19737303] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DP4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000527 Genomic DNA. Translation: ABM28753.1.
RefSeqYP_967180.1. NC_008751.1.

3D structure databases

ProteinModelPortalA1VE87.
ModBaseSearch...

Protein-protein interaction databases

STRINGA1VE87.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4663192.
GenomeReviewsGene locus Dvul_1736 in contig CP000527_GR.
KEGGdvl:Dvul_1736.
PATRIC21767348. VBIDesVul62463_1948.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0709.
HOGENOMHBG383791.
OMAAGXAAKL.
ProtClustDBCLSK705167.

Family and domain databases

HAMAPMF_00625. SelD.
[Tree]
InterProIPR000728. AIR_synth.
IPR010918. AIR_synth_C.
IPR016188. PurM_N-like.
IPR004536. SelD.
IPR023061. SelD_I.
[Graphical view]
KOK01008.
PfamPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]
PIRSFPIRSF036407. Selenphspht_syn. 1 hit.
SUPFAMSSF56042. AIR_synth_C. 1 hit.
SSF55326. PurM_N-like. 1 hit.
TIGRFAMsTIGR00476. SelD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameSELD_DESVV
AccessionPrimary (citable) accession number: A1VE87
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: February 26, 2008
Last modified: December 14, 2011
This is version 34 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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