A1VD24 (GCP_DESVV) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp

Alternative name(s):
t(6)A37 threonylcarbamoyladenosine biosynthesis protein

Gene names

Name:	gcp
Ordered Locus Names:	Dvul_1322

Organism

Desulfovibrio vulgaris subsp. vulgaris (strain DP4) [Complete proteome] [HAMAP]

Taxonomic identifier

391774 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Deltaproteobacteria › Desulfovibrionales › Desulfovibrionaceae › Desulfovibrio

Protein attributes

Sequence length	361 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t6A37) in tRNAs that read codons beginning with adenine By similarity. HAMAP MF_01445
Subcellular location	Cytoplasm Potential HAMAP MF_01445.
Sequence similarities	Belongs to the KAE1 / YgjD family.

Ontologies

Keywords
Biological process	tRNA processing
Cellular component	Cytoplasm
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	proteolysis Inferred from electronic annotation. Source: InterPro tRNA processing Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	metalloendopeptidase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 361	361	Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp HAMAP MF_01445		PRO_0000303350

Sequences

	Sequence		Length	Mass (Da)
	A1VD24 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: E30A5E87BDFBC227	FASTA	361	38,156
	10 20 30 40 50 60 MLCIGIETSC DETGLALVRD GRLVHAVMSS QADIHALFGG VVPEIASREH YRLIGPLYDL 70 80 90 100 110 120 LLREAGVGPT ELDAVAVARG PGLLGSLLVG MAFAKGLALG FDIPLVGVNH LHAHLLAAGL 130 140 150 160 170 180 ERELVFPALG LLVSGGHTHI YRIESPVSFR LLGRTLDDAA GEAYDKVAKM LRLPYPGGRI 190 200 210 220 230 240 LDQQGRRGIA DPRLFPRPYT DNDNLDFSFS GLKTAVQTHL SRHPELVPSP DAAQAVAGGH 250 260 270 280 290 300 DAPEGLRNMC ASFNEAVAET LCIKLGRALD GDDGVGVRAL IVAGGVAANS YVREHTARLA 310 320 330 340 350 360 VSRGLELIVP SPPLCTDNGS MIAYAGWLLR QGGLSHSLDL EAVPRGRAIP DDYRQGPAGC S

References

[1]

"Contribution of mobile genetic elements to Desulfovibrio vulgaris genome plasticity." Walker C.B., Stolyar S., Chivian D., Pinel N., Gabster J.A., Dehal P.S., He Z., Yang Z.K., Yen H.C., Zhou J., Wall J.D., Hazen T.C., Arkin A.P., Stahl D.A. Environ. Microbiol. 11:2244-2252(2009) [PubMed: 19737303] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DP4.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000527 Genomic DNA. Translation: ABM28340.1.
RefSeq	YP_966767.1. NC_008751.1.
3D structure databases
ProteinModelPortal	A1VD24.
ModBase	Search...
Protein-protein interaction databases
STRING	A1VD24.
Protein family/group databases
MEROPS	M22.001.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4663502.
GenomeReviews	Gene locus Dvul_1322 in contig CP000527_GR.
KEGG	dvl:Dvul_1322.
PATRIC	21766479. VBIDesVul62463_1525.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0533.
HOGENOM	HBG304663.
OMA	MEVIGQT.
PhylomeDB	A1VD24.
ProtClustDB	PRK09604.
Family and domain databases
HAMAP	MF_01445. gcp. [Tree]
InterPro	IPR022450. Pept_M22_O-sialoglycopept. IPR000905. Peptidase_M22. IPR017860. Peptidase_M22_CS. IPR017861. Peptidase_M22_subgr. [Graphical view]
KO	K01409.
Pfam	PF00814. Peptidase_M22. 1 hit. [Graphical view]
PRINTS	PR00789. OSIALOPTASE.
TIGRFAMs	TIGR03723. Bact_gcp. 1 hit. TIGR00329. Gcp_kae1. 1 hit.
PROSITE	PS01016. GLYCOPROTEASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

GCP_DESVV

Accession

Primary (citable) accession number: A1VD24

Entry history

Integrated into UniProtKB/Swiss-Prot:	September 11, 2007
Last sequence update:	February 6, 2007
Last modified:	December 14, 2011
This is version 37 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program