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A1VC54

- GLGB_DESVV

UniProt

A1VC54 - GLGB_DESVV

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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei317 – 3171NucleophileUniRule annotation
Active sitei370 – 3701Proton donorUniRule annotation

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciDVUL391774:GHS0-1033-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
Alpha-(1->4)-glucan branching enzymeUniRule annotation
Glycogen branching enzymeUniRule annotation
Short name:
BEUniRule annotation
Gene namesi
Name:glgBUniRule annotation
Ordered Locus Names:Dvul_0999
OrganismiDesulfovibrio vulgaris subsp. vulgaris (strain DP4)
Taxonomic identifieri391774 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
ProteomesiUP000009173: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 6406401,4-alpha-glucan branching enzyme GlgBPRO_1000044975Add
BLAST

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi391774.Dvul_0999.

Structurei

3D structure databases

ProteinModelPortaliA1VC54.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiALEWIEH.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

A1VC54-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTIPCSRPLF IEPFDLYLFG MGRHRHLYRI LGAHPAVQDG EAGYRFAVWA
60 70 80 90 100
PNARSVHLSG DCNGWRHEGC PLFPVGVSGV WAAFVPGVRR GSLYKFVVRG
110 120 130 140 150
ADGRQEQKAD PFALWAEMRP GVASVAWDID NHAWGDGAWM AERARQGLPL
160 170 180 190 200
ERPVSIYEVH LGSWRRRHGD GHPFLTYDEL GDQLIPYATG MGFTHLELLP
210 220 230 240 250
VAEHPLDQSW GYQTGHYYAP TSRFGSPEGF KRFVDRCHQA GLGVILDWVP
260 270 280 290 300
AHFPRDAWSL GRFDGTALYE HLDPRLGEHP DWGTYIFNYG RNEVRNFLTA
310 320 330 340 350
NALYWLREFH IDGLRMDAVA SMLYLDYSRE AGQWLPNRHG GRENLDAVDF
360 370 380 390 400
LREVNTVIHA EFPGAMTLAE ESTAWPGVSR PVYTGGLGFS FKWNMGWMHD
410 420 430 440 450
TLGYLAEDPI HRAYHHGSLT FSMLYAFSEN FVLPLSHDEV VHGKGALLSK
460 470 480 490 500
MPGDMWQQQA NLRLLYAYQW AHPGKKLLFM GGEFGQWNEW DESRELDWCL
510 520 530 540 550
YRFPAHEGIA RLVGDLNRLL RSEPAMHRRD HDWSGFRWVD FADYGSSVIS
560 570 580 590 600
FLRLAEGERP LLWIFNFTPV VRRFYRVPCP RGGTWRELCN TDSAYYGGSD
610 620 630 640
VGNAGAVMAR EDHWGGGHFI ELTLPPLAAM CFAPVTGQGT
Length:640
Mass (Da):72,779
Last modified:February 6, 2007 - v1
Checksum:i6321073898F4B1E4
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000527 Genomic DNA. Translation: ABM28020.1.
RefSeqiWP_011791978.1. NC_008751.1.
YP_966447.1. NC_008751.1.

Genome annotation databases

EnsemblBacteriaiABM28020; ABM28020; Dvul_0999.
GeneIDi4663919.
KEGGidvl:Dvul_0999.
PATRICi21765781. VBIDesVul62463_1185.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000527 Genomic DNA. Translation: ABM28020.1 .
RefSeqi WP_011791978.1. NC_008751.1.
YP_966447.1. NC_008751.1.

3D structure databases

ProteinModelPortali A1VC54.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 391774.Dvul_0999.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABM28020 ; ABM28020 ; Dvul_0999 .
GeneIDi 4663919.
KEGGi dvl:Dvul_0999.
PATRICi 21765781. VBIDesVul62463_1185.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi ALEWIEH.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci DVUL391774:GHS0-1033-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DP4.

Entry informationi

Entry nameiGLGB_DESVV
AccessioniPrimary (citable) accession number: A1VC54
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: February 6, 2007
Last modified: October 1, 2014
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3