A1USL6 (A1USL6_BARBK) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L23 HAMAP MF_01369

Gene names

Name:	rplW1 HAMAP MF_01369 EMBL ABM45405.1
Synonyms:	rplW2 EMBL ABM45483.1
Ordered Locus Names:	BARBAKC583_0668, BARBAKC583_0700

Organism

Bartonella bacilliformis (strain ATCC 35685 / KC583) [Complete proteome] [HAMAP]

Taxonomic identifier

360095 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bartonellaceae › Bartonella

Protein attributes

Sequence length	97 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity. HAMAP MF_01369
Subunit structure	Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity. HAMAP MF_01369
Sequence similarities	Belongs to the ribosomal protein L23P family. HAMAP MF_01369

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP MF_01369
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP MF_01369 EMBL ABM45405.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	nucleotide binding Inferred from electronic annotation. Source: InterPro rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A1USL6 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: 417448B97323212C	FASTA	97	10,687
	10 20 30 40 50 60 MTNLRHYDVI VSPVISEKST MISEYDQVVF NVALKATKPQ IKAAIEALFG VKVKAVNTIT 70 80 90 RKGKMKRFKG IVGRQSNIKK AIVTLVKGQL IDLSTGL

References

[1]

Hendrix L., Mohamoud Y., Radune D., Shvartsbeyn A., Daugherty S., Dodson R., Durkin A.S., Harkins D., Huot H., Kothari S.P., Madupu R., Li J., Nelson W.C., Shrivastava S., Giglio M.G., Haft D., Selengut J., Fraser-Ligget C., Seshadri R. Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000524 Genomic DNA. Translation: ABM45405.1. CP000524 Genomic DNA. Translation: ABM45483.1.
RefSeq	YP_988969.1. NC_008783.1. YP_988999.1. NC_008783.1.
3D structure databases
ProteinModelPortal	A1USL6.
ModBase	Search...
Protein-protein interaction databases
STRING	A1USL6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4684497. 4685151.
GenomeReviews	Gene locus BARBAKC583_0668 in contig CP000524_GR. Gene locus BARBAKC583_0700 in contig CP000524_GR.
KEGG	bbk:BARBAKC583_0668. bbk:BARBAKC583_0700.
NMPDR	fig|360095.3.peg.723.
PATRIC	20537623. VBIBarBac6912_0649.
TIGR	BARBAKC583_0668. BARBAKC583_0700.
Phylogenomic databases
eggNOG	COG0089.
HOGENOM	HBG439330.
OMA	WKKAYVS.
ProtClustDB	PRK05738.
Family and domain databases
HAMAP	MF_01369_B. Ribosomal_L23_B. [Tree]
InterPro	IPR012677. Nucleotide-bd_a/b_plait. IPR012678. Ribosomal_L23/L15e_core_dom. IPR013025. Ribosomal_L25/23. [Graphical view]
Gene3D	G3DSA:3.30.70.330. a_b_plait_nuc_bd. 1 hit.
KO	K02892.
Pfam	PF00276. Ribosomal_L23. 1 hit. [Graphical view]
SUPFAM	SSF54189. L23_L15e_core. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A1USL6_BARBK

Accession

Primary (citable) accession number: A1USL6

Entry history

Integrated into UniProtKB/TrEMBL:	February 6, 2007
Last sequence update:	February 6, 2007
Last modified:	December 14, 2011
This is version 37 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)