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A1UPI3 (A1UPI3_MYCSK) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 48. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL ABL94741.1
Gene names
Ordered Locus Names:Mkms_5557 EMBL ABL94741.1
Encoded onPlasmid pMKMS01 Ref.1 EMBL ABL94741.1
OrganismMycobacterium sp. (strain KMS) [Complete proteome] [HAMAP] EMBL ABL94741.1
Taxonomic identifier189918 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium

Protein attributes

Sequence length328 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABL94741.1
   Technical termComplete proteome
Plasmid EMBL ABL94741.1
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A1UPI3 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: ECC0696E19DC8F4A

FASTA32835,662
        10         20         30         40         50         60 
MTRASLSPDR LVAPAPMLAT LGPAPRGGQF AVEVKFDGQR GILTVDRRVQ VTSRNGADIT 

        70         80         90        100        110        120 
ETFPELSAVA AAVGGRRMVL DGEIVAVDEH GRPSFRRLQR RWPQQRRPGA QLVREVPTRF 

       130        140        150        160        170        180 
LAFDVMNIEG EDITHWPYRE RRELLDTLMV MESSPALTVP RHWTDVAPAD MLAICADQHH 

       190        200        210        220        230        240 
EGIVCKRLDS PYRSGRSRDW IKCPVRATTE AVIVGAFAGH RGEVGTLVLA AHDEAGQLVL 

       250        260        270        280        290        300 
LGQVGTGFSG AERRRLATLL AGTEVSAPPV AVGASMSGVQ WFKPRYVGEV AYREYHAGKG 

       310        320 
LRHASWKGLR SEPASGVCLP RDAGAAPG 

« Hide

References

[1]"Complete sequence of plasmid pMKMS01 of Mycobacterium sp. KMS."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Miller C.D., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: KMS EMBL ABL94741.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000519 Genomic DNA. Translation: ABL94741.1.
RefSeqYP_935556.1. NC_008703.1.

3D structure databases

ProteinModelPortalA1UPI3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING189918.Mkms_5557.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABL94741; ABL94741; Mkms_5557.
GeneID4610246.
KEGGmkm:Mkms_5557.
PATRIC18098020. VBIMycSp70743_0064.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000222509.
KOK01971.
OMAHARWVEP.
OrthoDBEOG65F8PX.

Enzyme and pathway databases

BioCycMSP189918:GH4X-5614-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA1UPI3_MYCSK
AccessionPrimary (citable) accession number: A1UPI3
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: May 14, 2014
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)