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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Mkms_5005

Organism
Mycobacterium sp. (strain KMS)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMSP189918:GH4X-5057-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Mkms_5005Imported
OrganismiMycobacterium sp. (strain KMS)Imported
Taxonomic identifieri189918 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycobacterium
ProteomesiUP000000638 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliA1UMY6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222508.
OMAiYRPHKSQ.
OrthoDBiEOG63NMFT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A1UMY6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDTMDLPVMP PLEPMLAKAQ AKVPTESGVW SYEPKWDGFR ALVFRDGDDV
60 70 80 90 100
VLMSRSGKDL ARYFPEVLDF VRDELAPRCV LDGEIVVPRE IGGRTRLDWE
110 120 130 140 150
SLSQRIHPAE SRVRKLSEET PAHFIGFDAL ASGDTSLMKE PFRARRQALI
160 170 180 190 200
EAVSHKQWCH VTRTTEDPGL GAQWLEEFEG AGLDGVIAKR LDGSYLPGKR
210 220 230 240 250
EMVKVKHARD ADCVAIGYRI HKSGEGIGSL LLGLYTDEGD LQMVGGAASF
260 270 280 290 300
TAKDRLKLLA ELEPLREGDE VREGDPSRWN SAADKRWIPI RPERVAEVAY
310 320 330 340 350
DQMEGNSVQG RRFRHAVKFR RWRPDRDPAS CTFDQLEVPL TYDLFDVLET

QDG
Length:353
Mass (Da):39,822
Last modified:February 6, 2007 - v1
Checksum:i76DAC3850601BAF4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000518 Genomic DNA. Translation: ABL94194.1.
RefSeqiWP_011562292.1. NC_008705.1.
YP_940984.1. NC_008705.1.

Genome annotation databases

EnsemblBacteriaiABL94194; ABL94194; Mkms_5005.
KEGGimkm:Mkms_5005.
PATRICi18109058. VBIMycSp70743_5534.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000518 Genomic DNA. Translation: ABL94194.1.
RefSeqiWP_011562292.1. NC_008705.1.
YP_940984.1. NC_008705.1.

3D structure databases

ProteinModelPortaliA1UMY6.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABL94194; ABL94194; Mkms_5005.
KEGGimkm:Mkms_5005.
PATRICi18109058. VBIMycSp70743_5534.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222508.
OMAiYRPHKSQ.
OrthoDBiEOG63NMFT.

Enzyme and pathway databases

BioCyciMSP189918:GH4X-5057-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: KMSImported.

Entry informationi

Entry nameiA1UMY6_MYCSK
AccessioniPrimary (citable) accession number: A1UMY6
Entry historyi
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: June 24, 2015
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.