A1UMY6 (A1UMY6_MYCSK) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ABL94194.1

Gene names

Ordered Locus Names:

Mkms_5005 EMBL ABL94194.1

Organism

Mycobacterium sp. (strain KMS) [Complete proteome] [HAMAP] EMBL ABL94194.1

Taxonomic identifier

189918 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium

Protein attributes

Sequence length	353 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABL94194.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A1UMY6 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: 76DAC3850601BAF4	FASTA	353	39,822
	10 20 30 40 50 60 MDTMDLPVMP PLEPMLAKAQ AKVPTESGVW SYEPKWDGFR ALVFRDGDDV VLMSRSGKDL 70 80 90 100 110 120 ARYFPEVLDF VRDELAPRCV LDGEIVVPRE IGGRTRLDWE SLSQRIHPAE SRVRKLSEET 130 140 150 160 170 180 PAHFIGFDAL ASGDTSLMKE PFRARRQALI EAVSHKQWCH VTRTTEDPGL GAQWLEEFEG 190 200 210 220 230 240 AGLDGVIAKR LDGSYLPGKR EMVKVKHARD ADCVAIGYRI HKSGEGIGSL LLGLYTDEGD 250 260 270 280 290 300 LQMVGGAASF TAKDRLKLLA ELEPLREGDE VREGDPSRWN SAADKRWIPI RPERVAEVAY 310 320 330 340 350 DQMEGNSVQG RRFRHAVKFR RWRPDRDPAS CTFDQLEVPL TYDLFDVLET QDG

References

[1]

"Complete sequence of chromosome of Mycobacterium sp. KMS." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Miller C.D., Richardson P. Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: KMS EMBL ABL94194.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000518 Genomic DNA. Translation: ABL94194.1.
RefSeq	YP_940984.1. NC_008705.1.
3D structure databases
ProteinModelPortal	A1UMY6.
ModBase	Search...
Protein-protein interaction databases
STRING	189918.Mkms_5005.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABL94194; ABL94194; Mkms_5005.
GeneID	4612684.
KEGG	mkm:Mkms_5005.
PATRIC	18109058. VBIMycSp70743_5534.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000222508.
KO	K01971.
OMA	FRHAARF.
ProtClustDB	PRK08224.
Enzyme and pathway databases
BioCyc	MSP189918:GH4X-5057-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A1UMY6_MYCSK

Accession

Primary (citable) accession number: A1UMY6

Entry history

Integrated into UniProtKB/TrEMBL:	February 6, 2007
Last sequence update:	February 6, 2007
Last modified:	May 29, 2013
This is version 45 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)