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Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD ligase module

Gene

Mkms_4438

Organism
Mycobacterium sp. (strain KMS)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMSP189918:GH4X-4480-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD ligase moduleImported
Gene namesi
Ordered Locus Names:Mkms_4438Imported
OrganismiMycobacterium sp. (strain KMS)Imported
Taxonomic identifieri189918 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycobacterium
ProteomesiUP000000638 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliA1ULC1.
SMRiA1ULC1. Positions 7-285, 454-758.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A1ULC1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVDHFGRVRL TNPDKVLYPA TGTTKAEVFE YYVDVAEAMV PHIAGRAVTR
60 70 80 90 100
KRWPNGVGEL EFFEKQLASS APDWLARGTI VHKSGTTTYP IIDTREGLAW
110 120 130 140 150
IAQQAALEVH VPQWRFVGSG GDLTPGPATR IVFDLDPGEG VTFRQLCEVA
160 170 180 190 200
HEVRDLITDI GLTAYPLTSG SKGLHLYVPL KEPISSQGAS VLAKRVAQQL
210 220 230 240 250
EKAMPKQVTA TMTKSLREGK VFLDWSQNNG NKTTIAPYSL RGREHPTVAA
260 270 280 290 300
PRTWEEIEDP DLRHLRFDEV LERIEEFGDL LADLDEYVPV EDRLTKYRSM
310 320 330 340 350
RDPSRTPEPV PPLPPKAGNN DRFVIQEHHA RRLHYDLRLE RDGVLVSWAV
360 370 380 390 400
PKNLPDRPSE NHLAVHTEDH PMEYLTFHGT IPKGEYGGGD MIVWDTGTYE
410 420 430 440 450
TEKFNDHAPD GPAKGGEVII TLHGNRIDGR YALIQTDGKN WLAHRMKDQG
460 470 480 490 500
NPTFEDFAPM LATHGSVEKF TAKQWAFEGK WDGYRLLVDA DHGKLCLKSR
510 520 530 540 550
SGRDVTAEYP QLRALAADLA DHHVVLDGEV VALDDKGVPS FGHMQNRARS
560 570 580 590 600
TRVEFWAFDI LRLDGRWLLK AKYRDRRKLL ETLASGGGLI VQPLLDGDGL
610 620 630 640 650
EALEDARKRR WEGVVAKKWD STYQPGRRSS AWIKDKLWNT QEVVIGGWRE
660 670 680 690 700
GNGGRSSGIG ALVLGIPGPD GLQFVGRVGT GFTEKELGSL KKTLAPLHTY
710 720 730 740 750
ESPFATRLPT QDAKGVTFVR PELVGEVRYS ERTGDGRLRQ PSWRGLRPDK

TPDDVVWE
Length:758
Mass (Da):84,908
Last modified:February 6, 2007 - v1
Checksum:iD6A3F480B86EE82C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000518 Genomic DNA. Translation: ABL93629.1.
RefSeqiWP_011561730.1. NC_008705.1.
YP_940419.1. NC_008705.1.

Genome annotation databases

EnsemblBacteriaiABL93629; ABL93629; Mkms_4438.
KEGGimkm:Mkms_4438.
PATRICi18107902. VBIMycSp70743_4965.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000518 Genomic DNA. Translation: ABL93629.1.
RefSeqiWP_011561730.1. NC_008705.1.
YP_940419.1. NC_008705.1.

3D structure databases

ProteinModelPortaliA1ULC1.
SMRiA1ULC1. Positions 7-285, 454-758.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABL93629; ABL93629; Mkms_4438.
KEGGimkm:Mkms_4438.
PATRICi18107902. VBIMycSp70743_4965.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciMSP189918:GH4X-4480-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: KMSImported.

Entry informationi

Entry nameiA1ULC1_MYCSK
AccessioniPrimary (citable) accession number: A1ULC1
Entry historyi
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: June 24, 2015
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.