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A1ULC1 (A1ULC1_MYCSK) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD ligase module EMBL ABL93629.1
Gene names
Ordered Locus Names:Mkms_4438 EMBL ABL93629.1
OrganismMycobacterium sp. (strain KMS) [Complete proteome] [HAMAP] EMBL ABL93629.1
Taxonomic identifier189918 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium

Protein attributes

Sequence length758 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABL93629.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

DNA primase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A1ULC1 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: D6A3F480B86EE82C

FASTA75884,908
        10         20         30         40         50         60 
MVDHFGRVRL TNPDKVLYPA TGTTKAEVFE YYVDVAEAMV PHIAGRAVTR KRWPNGVGEL 

        70         80         90        100        110        120 
EFFEKQLASS APDWLARGTI VHKSGTTTYP IIDTREGLAW IAQQAALEVH VPQWRFVGSG 

       130        140        150        160        170        180 
GDLTPGPATR IVFDLDPGEG VTFRQLCEVA HEVRDLITDI GLTAYPLTSG SKGLHLYVPL 

       190        200        210        220        230        240 
KEPISSQGAS VLAKRVAQQL EKAMPKQVTA TMTKSLREGK VFLDWSQNNG NKTTIAPYSL 

       250        260        270        280        290        300 
RGREHPTVAA PRTWEEIEDP DLRHLRFDEV LERIEEFGDL LADLDEYVPV EDRLTKYRSM 

       310        320        330        340        350        360 
RDPSRTPEPV PPLPPKAGNN DRFVIQEHHA RRLHYDLRLE RDGVLVSWAV PKNLPDRPSE 

       370        380        390        400        410        420 
NHLAVHTEDH PMEYLTFHGT IPKGEYGGGD MIVWDTGTYE TEKFNDHAPD GPAKGGEVII 

       430        440        450        460        470        480 
TLHGNRIDGR YALIQTDGKN WLAHRMKDQG NPTFEDFAPM LATHGSVEKF TAKQWAFEGK 

       490        500        510        520        530        540 
WDGYRLLVDA DHGKLCLKSR SGRDVTAEYP QLRALAADLA DHHVVLDGEV VALDDKGVPS 

       550        560        570        580        590        600 
FGHMQNRARS TRVEFWAFDI LRLDGRWLLK AKYRDRRKLL ETLASGGGLI VQPLLDGDGL 

       610        620        630        640        650        660 
EALEDARKRR WEGVVAKKWD STYQPGRRSS AWIKDKLWNT QEVVIGGWRE GNGGRSSGIG 

       670        680        690        700        710        720 
ALVLGIPGPD GLQFVGRVGT GFTEKELGSL KKTLAPLHTY ESPFATRLPT QDAKGVTFVR 

       730        740        750 
PELVGEVRYS ERTGDGRLRQ PSWRGLRPDK TPDDVVWE

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References

[1]"Complete sequence of chromosome of Mycobacterium sp. KMS."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Miller C.D., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: KMS EMBL ABL93629.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000518 Genomic DNA. Translation: ABL93629.1.
RefSeqYP_940419.1. NC_008705.1.

3D structure databases

ProteinModelPortalA1ULC1.
SMRA1ULC1. Positions 7-285, 454-758.
ModBaseSearch...

Protein-protein interaction databases

STRING189918.Mkms_4438.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABL93629; ABL93629; Mkms_4438.
GeneID4612381.
KEGGmkm:Mkms_4438.
PATRIC18107902. VBIMycSp70743_4965.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMASGSKGIH.
ProtClustDBPRK09632.

Enzyme and pathway databases

BioCycMSP189918:GH4X-4495-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA1ULC1_MYCSK
AccessionPrimary (citable) accession number: A1ULC1
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: May 1, 2013
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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