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Protein
Submitted name:

Pyridoxal-dependent decarboxylase

Gene

Maqu_3584

Organism
Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT8)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

  1. carboxy-lyase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. carboxylic acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciMHYD351348:GHYZ-3646-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Pyridoxal-dependent decarboxylaseImported
Gene namesi
Ordered Locus Names:Maqu_3584Imported
OrganismiMarinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT8)Imported
Taxonomic identifieri351348 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeMarinobacter
ProteomesiUP000000998: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi351348.Maqu_3584.

Structurei

3D structure databases

ProteinModelPortaliA1U6N4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiPRIKGRM.
OrthoDBiEOG6MSRZP.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

Sequencei

Sequence statusi: Complete.

A1U6N4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASLPDRSYT TQPQGTNAPL GGWQTFFATG PRPAPSDGFP EPTHRIPLNV
60 70 80 90 100
CGAMTGKKKS AQASLEAMYR VFTVPEAPES TLSRIDQDIS RNLAGFLQEH
110 120 130 140 150
IVAIERDLSE VEKDFSDYVI PEKPVFVSEQ TQFLLDKLVA NSVHTASPAF
160 170 180 190 200
IGHMTSALPY FMLPLSKIMI ALNQNLVKTE TSKAFTPMER QVLGQIHRLV
210 220 230 240 250
YQEDGSFYRK WMHDPRHALG AMCSGGTVAN LTALWVARNR AFPAEGSFRG
260 270 280 290 300
LHEEGLFRAL KYYGHEGAAI VVSKRGHYSL RKAADVLGLG RDALVPVETD
310 320 330 340 350
EFNRIQTDAL RDKCLELQKQ KIKIMAICGV AGTTETGNVD PLDAMADIAR
360 370 380 390 400
EFGAHFHVDA AWGGPTLFSR THRHLLRGIE KADSVTFDAH KQLYVPMGAG
410 420 430 440 450
LVVFKDPSLA SAVEHHAQYI IRKGSRDLGS TTLEGSRPGM AMLIHSGLKI
460 470 480 490 500
LAREGYEILI DQGIDKAKTF ANMIDEQPDF ELVTRPELNI LTYRYCPEDV
510 520 530 540 550
RQALAMADEL QAEKMNTCLN RITKFIQKTQ RERGKAFVSR TRLEPARYYH
560 570 580 590 600
FPCIVFRVVL ANPLTTPDIL EDILREQREL SKEDGIADEM AILHQMAAAV
610
LKQNQKEARQ A
Length:611
Mass (Da):68,161
Last modified:February 6, 2007 - v1
Checksum:iA454E02506D6E520
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000514 Genomic DNA. Translation: ABM20653.1.
RefSeqiYP_960840.1. NC_008740.1.

Genome annotation databases

EnsemblBacteriaiABM20653; ABM20653; Maqu_3584.
GeneIDi4654856.
KEGGimaq:Maqu_3584.
PATRICi22462540. VBIMarAqu65105_4010.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000514 Genomic DNA. Translation: ABM20653.1.
RefSeqiYP_960840.1. NC_008740.1.

3D structure databases

ProteinModelPortaliA1U6N4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi351348.Maqu_3584.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABM20653; ABM20653; Maqu_3584.
GeneIDi4654856.
KEGGimaq:Maqu_3584.
PATRICi22462540. VBIMarAqu65105_4010.

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiPRIKGRM.
OrthoDBiEOG6MSRZP.

Enzyme and pathway databases

BioCyciMHYD351348:GHYZ-3646-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome 1 of Marinobacter aquaeolei VT8."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J.
    , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Edwards K., Richardson P.
    Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700491 / DSM 11845 / VT8Imported.

Entry informationi

Entry nameiA1U6N4_MARHV
AccessioniPrimary (citable) accession number: A1U6N4
Entry historyi
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: March 4, 2015
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.