A1TZ05 (A1TZ05_MARAV) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Ordered Locus Names:

Maqu_0878 EMBL ABM17974.1

Organism

Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) (Marinobacter hydrocarbonoclasticus (strain DSM 11845)) [Complete proteome] [HAMAP] EMBL ABM17974.1

Taxonomic identifier

351348 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Alteromonadaceae › Marinobacter › Marinobacter hydrocarbonoclasticus

Protein attributes

Sequence length	325 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886 EMBL ABM17974.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A1TZ05 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: 09144260A1B73932	FASTA	325	36,099
	10 20 30 40 50 60 MTSENRITGQ FTVPPELSDK RLDQAAAELM PEHSRSRLQS WIKSGALTVN GKSRKPRDKV 70 80 90 100 110 120 MMGDSLALDA EPEVQVTWEA EPISLDIVYE DEHLLVINKP AGLVVHPAAG HTDGTLVNAL 130 140 150 160 170 180 LNYAPEVENL PRAGIVHRLD KDTSGIMVVA RSLIAHTSLV DQLQTRTMGR EYEAVVVGAL 190 200 210 220 230 240 TGGATVDAPI GRHPQDRKRM AVVSSGKPAV THYRLLERFA AHTLVRCKLE SGRTHQIRVH 250 260 270 280 290 300 MAHVRHPLVG DPAYGGRLRL PKGTTEELRD VLAAFTRQAL HARQLTLEHP ETGEILSWEV 310 320 PLPEDMVHLI EALRKHAREL EERDF

References

[1]

"Complete sequence of chromosome 1 of Marinobacter aquaeolei VT8." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Edwards K., Richardson P. Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700491 / DSM 11845 / VT8.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000514 Genomic DNA. Translation: ABM17974.1.
RefSeq	YP_958161.1. NC_008740.1.
3D structure databases
ProteinModelPortal	A1TZ05.
SMR	A1TZ05. Positions 78-320.
ModBase	Search...
Protein-protein interaction databases
STRING	351348.Maqu_0878.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABM17974; ABM17974; Maqu_0878.
GeneID	4656080.
KEGG	maq:Maqu_0878.
PATRIC	22456980. VBIMarAqu65105_1276.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0564.
HOGENOM	HOG000275919.
KO	K06180.
OMA	KTIPAQT.
ProtClustDB	CLSK719805.
Enzyme and pathway databases
BioCyc	MHYD351348:GHYZ-868-MONOMER.
Family and domain databases
Gene3D	3.10.290.10. 1 hit.
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006225. PsdUridine_synth_RluC/D. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. IPR002942. S4_RNA-bd. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00005. rluA_subfam. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A1TZ05_MARAV

Accession

Primary (citable) accession number: A1TZ05

Entry history

Integrated into UniProtKB/TrEMBL:	February 6, 2007
Last sequence update:	February 6, 2007
Last modified:	May 1, 2013
This is version 45 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)