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Protein
Submitted name:

ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module

Gene

Aave_2519

Organism
Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp. citrulli)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciACIT397945:GI5W-2550-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase moduleImported
Gene namesi
Ordered Locus Names:Aave_2519Imported
OrganismiAcidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp. citrulli)Imported
Taxonomic identifieri397945 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeAcidovorax
ProteomesiUP000002596 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi397945.Aave_2519.

Structurei

3D structure databases

ProteinModelPortaliA1TQ54.
SMRiA1TQ54. Positions 643-928.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A1TQ54-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARRSRTSGT AQEAPRKAPQ KAPPDALADY ARKRDFRNTP EPGAEPGDAL
60 70 80 90 100
PRGALRFVVQ KHWASRLHYD FRLEIDGTMK SWAVPKGPSF DPRDKRMAVQ
110 120 130 140 150
VEDHPVAYNR FEGQIPARQY GAGRVIIWDK GYWVPLEDPA RAWRAGKLKF
160 170 180 190 200
ELHGHKLQGR WTLVRMHGRG NERQPPWLLI KERDGLERDA VEYSVVDALP
210 220 230 240 250
DSVKSLPDLP EPAPARGRQA PAPAASSPAR RTAARGKAAA SAPAPAPEPA
260 270 280 290 300
AGRTARAGTS PRPKKAALPA ALAPQLATLV DGPPTDLAEW MFELKFDGYR
310 320 330 340 350
ILARIEGGEV RLITRNGNDW THRMPGLARA VRALPVESGW IDGEIVVPDR
360 370 380 390 400
HGIPDFQALQ NAFESGRRPG RSAAGSPDDG AVDRSGLVFY VFDLPFLNGH
410 420 430 440 450
DLRGLPLAER RQALRTLVAE AGSDTVRFSD AFEASPGELI ASACRLGFEG
460 470 480 490 500
VIGKRVSSAY GSGRSADWIK LKCGQRQEFV IGGYTDPQGT RTGLGSLLLG
510 520 530 540 550
VHGDDGQLHY AGNVGSGFSE RTLTTLLGLL RSLAADRSPF AEGTQVGRKA
560 570 580 590 600
HWVKPQLLAE VAFAGWTQTR HVRQAVFRGL REDKPPREIV RETPAPAATV
610 620 630 640 650
AGPSPTPPAA PRPASSEATP SRARSTMTSR RTASAPSPAS PPSSLRVTHG
660 670 680 690 700
DRVIDAASGT TKLDLVRYYA LVAPLMMEHL RQRPVSVVRA PEGVGGELFF
710 720 730 740 750
QKHPEHGSVD GVRTLDPALD PGHPPLAEIA GPEGLPAWAQ MNTIEFHSWN
760 770 780 790 800
ARSDRIDRPD RMAFDLDPGE GVPWDKVQEA TTLMRVMLTE LGLPGFLKTS
810 820 830 840 850
GGKGLHVVVP IKRLYGWDAV KGFSQAVVQH MARTIPQLFV AKSGPRNRVG
860 870 880 890 900
KIFVDYLRNG FGATTVSAWS ARARPGLGIS VPLRWDELGA LSSSTEWTVA
910 920 930
TVEDRLREGN APWDGYAKAA VSITQAMKML GYEPPRGGR
Length:939
Mass (Da):102,005
Last modified:February 6, 2007 - v1
Checksum:i1952C9F33AA4DD6A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000512 Genomic DNA. Translation: ABM33092.1.
RefSeqiWP_011795619.1. NC_008752.1.
YP_970866.1. NC_008752.1.

Genome annotation databases

EnsemblBacteriaiABM33092; ABM33092; Aave_2519.
KEGGiaav:Aave_2519.
PATRICi20680181. VBIAciCit38535_2571.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000512 Genomic DNA. Translation: ABM33092.1.
RefSeqiWP_011795619.1. NC_008752.1.
YP_970866.1. NC_008752.1.

3D structure databases

ProteinModelPortaliA1TQ54.
SMRiA1TQ54. Positions 643-928.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi397945.Aave_2519.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABM33092; ABM33092; Aave_2519.
KEGGiaav:Aave_2519.
PATRICi20680181. VBIAciCit38535_2571.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciACIT397945:GI5W-2550-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Acidovorax avenae subsp. citrulli AAC00-1."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M.
    , Hauser L., Kyrpides N., Kim E., Stahl D., Richardson P.
    Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AAC00-1Imported.

Entry informationi

Entry nameiA1TQ54_ACIAC
AccessioniPrimary (citable) accession number: A1TQ54
Entry historyi
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: May 27, 2015
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.