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A1TQ54 (A1TQ54_ACIAC) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 41. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module EMBL ABM33092.1
Gene names
Ordered Locus Names:Aave_2519
OrganismAcidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp. citrulli) [Complete proteome] [HAMAP] EMBL ABM33092.1
Taxonomic identifier397945 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Acidovorax ›

Protein attributes

Sequence length939 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABM33092.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A1TQ54 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: 1952C9F33AA4DD6A

FASTA939102,005
        10         20         30         40         50         60 
MARRSRTSGT AQEAPRKAPQ KAPPDALADY ARKRDFRNTP EPGAEPGDAL PRGALRFVVQ 

        70         80         90        100        110        120 
KHWASRLHYD FRLEIDGTMK SWAVPKGPSF DPRDKRMAVQ VEDHPVAYNR FEGQIPARQY 

       130        140        150        160        170        180 
GAGRVIIWDK GYWVPLEDPA RAWRAGKLKF ELHGHKLQGR WTLVRMHGRG NERQPPWLLI 

       190        200        210        220        230        240 
KERDGLERDA VEYSVVDALP DSVKSLPDLP EPAPARGRQA PAPAASSPAR RTAARGKAAA 

       250        260        270        280        290        300 
SAPAPAPEPA AGRTARAGTS PRPKKAALPA ALAPQLATLV DGPPTDLAEW MFELKFDGYR 

       310        320        330        340        350        360 
ILARIEGGEV RLITRNGNDW THRMPGLARA VRALPVESGW IDGEIVVPDR HGIPDFQALQ 

       370        380        390        400        410        420 
NAFESGRRPG RSAAGSPDDG AVDRSGLVFY VFDLPFLNGH DLRGLPLAER RQALRTLVAE 

       430        440        450        460        470        480 
AGSDTVRFSD AFEASPGELI ASACRLGFEG VIGKRVSSAY GSGRSADWIK LKCGQRQEFV 

       490        500        510        520        530        540 
IGGYTDPQGT RTGLGSLLLG VHGDDGQLHY AGNVGSGFSE RTLTTLLGLL RSLAADRSPF 

       550        560        570        580        590        600 
AEGTQVGRKA HWVKPQLLAE VAFAGWTQTR HVRQAVFRGL REDKPPREIV RETPAPAATV 

       610        620        630        640        650        660 
AGPSPTPPAA PRPASSEATP SRARSTMTSR RTASAPSPAS PPSSLRVTHG DRVIDAASGT 

       670        680        690        700        710        720 
TKLDLVRYYA LVAPLMMEHL RQRPVSVVRA PEGVGGELFF QKHPEHGSVD GVRTLDPALD 

       730        740        750        760        770        780 
PGHPPLAEIA GPEGLPAWAQ MNTIEFHSWN ARSDRIDRPD RMAFDLDPGE GVPWDKVQEA 

       790        800        810        820        830        840 
TTLMRVMLTE LGLPGFLKTS GGKGLHVVVP IKRLYGWDAV KGFSQAVVQH MARTIPQLFV 

       850        860        870        880        890        900 
AKSGPRNRVG KIFVDYLRNG FGATTVSAWS ARARPGLGIS VPLRWDELGA LSSSTEWTVA 

       910        920        930 
TVEDRLREGN APWDGYAKAA VSITQAMKML GYEPPRGGR

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References

[1]"Complete sequence of Acidovorax avenae subsp. citrulli AAC00-1."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Kim E., Stahl D., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: AAC00-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000512 Genomic DNA. Translation: ABM33092.1.
RefSeqYP_970866.1. NC_008752.1.

3D structure databases

ProteinModelPortalA1TQ54.
SMRA1TQ54. Positions 643-928.
ModBaseSearch...

Protein-protein interaction databases

STRING397945.Aave_2519.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABM33092; ABM33092; Aave_2519.
GeneID4669152.
KEGGaav:Aave_2519.
PATRIC20680181. VBIAciCit38535_2571.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMALVAECEF.
ProtClustDBPRK05972.

Enzyme and pathway databases

BioCycACIT397945:GI5W-2583-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA1TQ54_ACIAC
AccessionPrimary (citable) accession number: A1TQ54
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: May 1, 2013
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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