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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Aave_0375

Organism
Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp. citrulli)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciACIT397945:GI5W-375-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Aave_0375Imported
OrganismiAcidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp. citrulli)Imported
Taxonomic identifieri397945 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeAcidovorax
ProteomesiUP000002596: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi397945.Aave_0375.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiWIRQNTI.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A1TJ44-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKDFAALYRA LDASTSSLAK QAALQAYLRA AAPADAAWAV YFLAGGKPRQ
60 70 80 90 100
LVPTKLLRQF AREAAGLPEW LFDESYEAVG DLAETIALLL PAPAEAHALG
110 120 130 140 150
LAEWVEQHLL PLRGMAPEAL EPMLRAQWNR LAPEERLVYF KLITGAFRVG
160 170 180 190 200
VSKLQVTQAL AAVSGVDPKR VAQRLMGYTH IGARPGPADY ERLVAPLAET
210 220 230 240 250
GQGAADDAAQ SGETSGHPYP FFLAHPLSLP VDQFAATLGP PGGWIVEWKW
260 270 280 290 300
DGIRAQLVRR AGATWVWSRG EELVSDRFPE LQRLGQEALP DGTVLDGEIV
310 320 330 340 350
VWQHAEGDAP ARVRPFADLQ KRIGRKTLGP KLLRELPVVL LAYDLLEEDG
360 370 380 390 400
KDLRALPQHE RRARLDALLA RVSHPALVAS PLLHGHDWDE LAARRAHARS
410 420 430 440 450
LGVEGMMLKA RDAQYGVGRT KDVGTWWKWK IDPLSVDAVL IYAQRGHGRR
460 470 480 490 500
ASLYSDYTFA VWDGPPGAEG RSLVPFAKAY SGLTDAEMAR VDAVIRRTTV
510 520 530 540 550
ETFGPVRSVK PTLVFELGFE GIARSARHKS GIAVRFPRML RWREDKPVEE
560
ADSLETLEAL LPRSDP
Length:566
Mass (Da):62,308
Last modified:February 6, 2007 - v1
Checksum:i9D4D0537A5099B91
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000512 Genomic DNA. Translation: ABM30982.1.
RefSeqiWP_011793559.1. NC_008752.1.
YP_968756.1. NC_008752.1.

Genome annotation databases

EnsemblBacteriaiABM30982; ABM30982; Aave_0375.
GeneIDi4665885.
KEGGiaav:Aave_0375.
PATRICi20675777. VBIAciCit38535_0396.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000512 Genomic DNA. Translation: ABM30982.1.
RefSeqiWP_011793559.1. NC_008752.1.
YP_968756.1. NC_008752.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi397945.Aave_0375.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABM30982; ABM30982; Aave_0375.
GeneIDi4665885.
KEGGiaav:Aave_0375.
PATRICi20675777. VBIAciCit38535_0396.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiWIRQNTI.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciACIT397945:GI5W-375-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Acidovorax avenae subsp. citrulli AAC00-1."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M.
    , Hauser L., Kyrpides N., Kim E., Stahl D., Richardson P.
    Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AAC00-1Imported.

Entry informationi

Entry nameiA1TJ44_ACIAC
AccessioniPrimary (citable) accession number: A1TJ44
Entry historyi
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: March 4, 2015
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.