A1TD29 (A1TD29_MYCVP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
1,4-alpha-glucan branching enzyme GlgB HAMAP MF_00685
EC=2.4.1.18 HAMAP MF_00685

Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase HAMAP MF_00685
Alpha-(1->4)-glucan branching enzyme HAMAP MF_00685
Glycogen branching enzyme HAMAP MF_00685

Gene names

Name:	glgB HAMAP MF_00685
Ordered Locus Names:	Mvan_4302

Organism

Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) [Complete proteome] [HAMAP]

Taxonomic identifier

350058 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium

Protein attributes

Sequence length	737 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity. HAMAP MF_00685
Catalytic activity	Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain. HAMAP MF_00685 SAAS SAAS006407
Pathway	Glycan biosynthesis; glycogen biosynthesis. HAMAP MF_00685 SAAS SAAS006407
Subunit structure	Monomer By similarity. HAMAP MF_00685
Sequence similarities	Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. HAMAP MF_00685

Ontologies

Keywords
Biological process	Carbohydrate metabolism Glycogen biosynthesis HAMAP MF_00685 SAAS SAAS006407 Glycogen metabolism HAMAP MF_00685
Molecular function	Glycosyltransferase HAMAP MF_00685 SAAS SAAS006407 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycogen biosynthetic process Inferred from electronic annotation. Source: HAMAP
Molecular function	1,4-alpha-glucan branching enzyme activity Inferred from electronic annotation. Source: HAMAP cation binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Active site	417	1	Nucleophile By similarity HAMAP MF_00685
	Active site	470	1	Proton donor By similarity HAMAP MF_00685

Sequences

	Sequence		Length	Mass (Da)
	A1TD29 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: D80731125DC8107B	FASTA	737	83,421
	10 20 30 40 50 60 MTNVSNLNNQ VDSPHLRPHT ADLNRLLAGE HHDPHAILGA HEYDDHTVIR AYRPHAVAVV 70 80 90 100 110 120 AVVGKNRYPL RHIEAGLFAV AVPFTNLIDY RFEIRYSEDE SAFVHTVADA YRFLPTLGEV 130 140 150 160 170 180 DLHLFAEGRH ERLWEILGAH PRSFTTSDGV VNGVSFAVWA PNAKGVSVTG DFNHWGNEAQ 190 200 210 220 230 240 MRVLGSTGVW ELFWPNFPDG GLYKFRVHGA DGSVTDRADP MAFATEVPPQ TASRVFRSDY 250 260 270 280 290 300 TWSDQEWMSG RALRNPVFEP MSTYEVHLGS WRPGLSYIEL AEQLTDYVVE HGFTHVEMLP 310 320 330 340 350 360 VAEHPFGGSW GYQVTSYYAP SSRFGTPDEF RYLVDALHRA GIGVIVDWVP AHFPKDAWAL 370 380 390 400 410 420 GRFDGTALYE HGDPRRGEQL DWGTYVFDFG RSEVRNFLVA NALYWLQEYH IDGLRVDAVA 430 440 450 460 470 480 SMLYLDYSRP EGGWSPNIYG GRENLEAVQF LQEMNATVHK INPGIVTIAE ESTSWPGVTR 490 500 510 520 530 540 PTNLGGLGFS MKWNMGWMND TLEFIKRDPI HRSYHHHEMT FSLLYAFSEN FVLPISHDEV 550 560 570 580 590 600 VHGKGTLWGR MPGNDHMKAA GIRSLLAYQW AHPGKQLLFM GQEFGQRAEW SEERGVDWFQ 610 620 630 640 650 660 LDEQGFSGGI LRMMTDANEI YRSRRALWSR DTQPEGYSWI DANDSANNVL SFLRFGDDGS 670 680 690 700 710 720 MMACVFNFSG SEHTRYRLGL PHAGRWREVL NTDSDTYHGT GIGNYGAVEA TDEPWHGRPA 730 SAVMVLPPLS ALWFEPE

References

[1]

"Complete sequence of Mycobacterium vanbaalenii PYR-1." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Singan V., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Anderson I.J., Miller C., Richardson P. Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 7251 / PYR-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000511 Genomic DNA. Translation: ABM15079.1.
RefSeq	YP_955085.1. NC_008726.1.
3D structure databases
ProteinModelPortal	A1TD29.
ModBase	Search...
Protein-protein interaction databases
STRING	A1TD29.
Protein family/group databases
CAZy	CBM48. Carbohydrate-Binding Module Family 48. GH13. Glycoside Hydrolase Family 13.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EBMYCT00000080944; EBMYCP00000078897; EBMYCG00000080939.
GeneID	4648404.
GenomeReviews	Gene locus Mvan_4302 in contig CP000511_GR.
KEGG	mva:Mvan_4302.
PATRIC	18186933. VBIMycVan31953_4374.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0296.
GeneTree	EBGT00050000016657.
HOGENOM	HBG287139.
OMA	DGTCLYE.
PhylomeDB	A1TD29.
ProtClustDB	PRK05402.
Family and domain databases
HAMAP	MF_00685. GlgB. [Tree]
InterPro	IPR006407. 1-4-A-glucan_branch_enz. IPR006048. A-amylase_b_C. IPR015902. Alpha_amylase. IPR013780. Glyco_hydro_13_b. IPR006047. Glyco_hydro_13_cat_dom. IPR004193. Glyco_hydro_13_N. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. IPR013783. Ig-like_fold. IPR014756. Ig_E-set. [Graphical view]
Gene3D	G3DSA:2.60.40.1180. Glyco_hydro_13_b. 1 hit. G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit. G3DSA:2.60.40.10. Ig-like_fold. 2 hits.
KO	K00700.
PANTHER	PTHR10357. Alpha_amylase. 1 hit. PTHR10357:SF13. PTHR10357:SF13. 1 hit.
Pfam	PF00128. Alpha-amylase. 1 hit. PF02806. Alpha-amylase_C. 1 hit. PF02922. CBM_48. 1 hit. [Graphical view]
PIRSF	PIRSF000463. GlgB. 1 hit.
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit. SSF81296. Ig_E-set. 1 hit.
TIGRFAMs	TIGR01515. Branching_enzym. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A1TD29_MYCVP

Accession

Primary (citable) accession number: A1TD29

Entry history

Integrated into UniProtKB/TrEMBL:	February 6, 2007
Last sequence update:	February 6, 2007
Last modified:	December 14, 2011
This is version 45 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)