A1TC23 (A1TC23_MYCVP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L21 HAMAP MF_01363 RuleBase RU000562

Gene names

Name:	rplU HAMAP MF_01363
Ordered Locus Names:	Mvan_3946

Organism

Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) [Complete proteome] [HAMAP]

Taxonomic identifier

350058 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium

Protein attributes

Sequence length	107 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This protein binds to 23S rRNA in the presence of protein L20 By similarity. HAMAP MF_01363 RuleBase RU000562
Subunit structure	Part of the 50S ribosomal subunit. Contacts protein L20 By similarity. HAMAP MF_01363
Sequence similarities	Belongs to the ribosomal protein L21P family. HAMAP MF_01363 RuleBase RU000562

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP MF_01363 RuleBase RU000562
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP MF_01363 RuleBase RU000562 EMBL ABM14723.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A1TC23 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: C79BF7EA1ED8C190	FASTA	107	11,459
	10 20 30 40 50 60 MAAKTATYAI VKTGGKQYKV AAGDIVKVEK LDVEPGASVS LPVALVVDGA KVTTDAKALE 70 80 90 100 KVAVTGEVLE HTKGPKIRIH KFKNKTGYHK RQGHRQQLTV LKVTGIK

References

[1]

"Complete sequence of Mycobacterium vanbaalenii PYR-1." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Singan V., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Anderson I.J., Miller C., Richardson P. Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 7251 / PYR-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000511 Genomic DNA. Translation: ABM14723.1.
RefSeq	YP_954729.1. NC_008726.1.
3D structure databases
ProteinModelPortal	A1TC23.
ModBase	Search...
Protein-protein interaction databases
STRING	A1TC23.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EBMYCT00000077501; EBMYCP00000075454; EBMYCG00000077496.
GeneID	4646237.
GenomeReviews	Gene locus Mvan_3946 in contig CP000511_GR.
KEGG	mva:Mvan_3946.
PATRIC	18186201. VBIMycVan31953_4014.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0261.
GeneTree	EBGT00050000017407.
HOGENOM	HBG706775.
OMA	IKVEQIA.
PhylomeDB	A1TC23.
ProtClustDB	PRK05573.
Family and domain databases
HAMAP	MF_01363. Ribosomal_L21. [Tree]
InterPro	IPR001787. Ribosomal_L21. IPR018258. Ribosomal_L21_CS. [Graphical view]
KO	K02888.
PANTHER	PTHR21349. Ribosomal_L21p. 1 hit.
Pfam	PF00829. Ribosomal_L21p. 1 hit. [Graphical view]
TIGRFAMs	TIGR00061. L21. 1 hit.
PROSITE	PS01169. RIBOSOMAL_L21. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A1TC23_MYCVP

Accession

Primary (citable) accession number: A1TC23

Entry history

Integrated into UniProtKB/TrEMBL:	February 6, 2007
Last sequence update:	February 6, 2007
Last modified:	December 14, 2011
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)