A1T754 (RIMM_MYCVP) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Ribosome maturation factor rimM

Gene names

Name:	rimM
Ordered Locus Names:	Mvan_2189

Organism

Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) [Complete proteome] [HAMAP]

Taxonomic identifier

350058 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium

Protein attributes

Sequence length	172 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes By similarity. HAMAP MF_00014
Subunit structure	Binds ribosomal protein S19 By similarity. HAMAP MF_00014
Subcellular location	Cytoplasm By similarity HAMAP MF_00014.
Domain	The PRC barrel domain binds ribosomal protein S19 By similarity. HAMAP MF_00014
Sequence similarities	Belongs to the rimM family. Contains 1 PRC barrel domain.

Ontologies

Keywords
Biological process	Ribosome biogenesis
Cellular component	Cytoplasm
Molecular function	Chaperone
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	rRNA processing Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: InterPro
Molecular function	ribosome binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 172	172	Ribosome maturation factor rimM HAMAP MF_00014		PRO_1000001203
Regions
	Domain	96 – 169	74	PRC barrel

Sequences

	Sequence		Length	Mass (Da)
	A1T754 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: AC436C240842BC17	FASTA	172	18,098
	10 20 30 40 50 60 MDLVVGRVVK AHGVTGELAV DVRTDDPEGR FVAGAVLRGR PARGGAEREF VIESVRSHGD 70 80 90 100 110 120 RMLIRLQGVG DRDAADALRG TLFLVDSAEL PPIEDPDEFY DHQLEGMAVS TTGGQPVGTV 130 140 150 160 170 AEVLHTAAGE LLAVRDPDGA EVLVPFVSAI VVSVSLADNA IEIDPPEGLL DL

References

[1]

"Complete sequence of Mycobacterium vanbaalenii PYR-1." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Singan V., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Anderson I.J., Miller C., Richardson P. Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 7251 / PYR-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000511 Genomic DNA. Translation: ABM13004.1.
RefSeq	YP_953010.1. NC_008726.1.
3D structure databases
ProteinModelPortal	A1T754.
ModBase	Search...
Protein-protein interaction databases
STRING	A1T754.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EBMYCT00000079245; EBMYCP00000077198; EBMYCG00000079240.
GeneID	4645564.
GenomeReviews	Gene locus Mvan_2189 in contig CP000511_GR.
KEGG	mva:Mvan_2189.
PATRIC	18182613. VBIMycVan31953_2233.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0806.
GeneTree	EBGT00050000017443.
HOGENOM	HBG703775.
OMA	PDEFYDH.
PhylomeDB	A1T754.
ProtClustDB	PRK00122.
Enzyme and pathway databases
BioCyc	MVAN350058:MVAN_2189-MONOMER.
Family and domain databases
HAMAP	MF_00014. Ribosome_mat_RimM. [Tree]
InterPro	IPR011961. 16S_RimM. IPR007903. PRC_barrel. IPR011033. PRC_barrell-like. IPR002676. RimM. IPR009000. Transl_elong_init/rib_B-barrel. [Graphical view]
Gene3D	G3DSA:2.40.30.60. G3DSA:2.40.30.60. 1 hit.
KO	K02860.
Pfam	PF05239. PRC. 1 hit. PF01782. RimM. 1 hit. [Graphical view]
SUPFAM	SSF50346. PRCH_cytoplasmic. 1 hit. SSF50447. Translat_factor. 1 hit.
TIGRFAMs	TIGR02273. 16S_RimM. 1 hit.
ProtoNet	Search...

Entry information

Entry name

RIMM_MYCVP

Accession

Primary (citable) accession number: A1T754

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 15, 2008
Last sequence update:	February 6, 2007
Last modified:	December 14, 2011
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program