Skip Header

Contribute Send feedback
Read comments (?) or add your own

A1SZU5 (A1SZU5_PSYIN) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Peptide deformylase 2 HAMAP MF_00163
Short name=PDF 2 HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase 2 HAMAP MF_00163
Gene names
Name:def2 HAMAP MF_00163
Ordered Locus Names:Ping_3323
OrganismPsychromonas ingrahamii (strain 37) [Complete proteome] [HAMAP] EMBL ABM05010.1
Taxonomic identifier357804 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Psychromonadaceae › Psychromonas

Protein attributes

Sequence length182 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1481 By similarity HAMAP MF_00163
Metal binding1051Iron By similarity HAMAP MF_00163
Metal binding1471Iron By similarity HAMAP MF_00163
Metal binding1511Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
A1SZU5 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: 3E24E929427626DF

FASTA18220,532
        10         20         30         40         50         60 
MNQTKNKSYP IAQLGHPVLR QRATEVENVL ADECQQLINQ MMFAVSEAGG VGIAAPQIHH 

        70         80         90        100        110        120 
SVRMFIMCSK PNARYPDAPL MAPTAIINPE ILHYSSDKVK GWEGCLSVPS MRGLVPRHSQ 

       130        140        150        160        170        180 
ITVRYVDQQG NKQQQELTGF IARIFQHELD HLNGLTFIDQ LESTQDLISE VEWYQQFASI 


QS

« Hide

References

[1]"Complete sequence of Psychromonas ingrahamii 37."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Han C., Tapia R., Schmutz J., Larimer F. expand/collapse author list , Land M., Hauser L., Kyrpides N., Ivanova N., Staley J., Richardson P.
Submitted (JAN-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 37.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000510 Genomic DNA. Translation: ABM05010.1.
RefSeqYP_944609.1. NC_008709.1.

3D structure databases

ProteinModelPortalA1SZU5.
ModBaseSearch...

Protein-protein interaction databases

STRINGA1SZU5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4625737.
GenomeReviewsGene locus Ping_3323 in contig CP000510_GR.
KEGGpin:Ping_3323.
PATRIC23072199. VBIPsyIng103130_3675.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0242.
HOGENOMHBG665227.
OMATVAKANG.

Enzyme and pathway databases

BioCycPING357804:PING_3323-MONOMER.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA1SZU5_PSYIN
AccessionPrimary (citable) accession number: A1SZU5
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: December 14, 2011
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info