A1SYK2 (A1SYK2_PSYIN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
2-deoxyribose-5-phosphate aldolase, NAD(P)-linked EMBL ABM04567.1
EC=4.1.2.4 EMBL ABM04567.1

Gene names

Ordered Locus Names:

Ping_2862

Organism

Psychromonas ingrahamii (strain 37) [Complete proteome] [HAMAP] EMBL ABM04567.1

Taxonomic identifier

357804 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Psychromonadaceae › Psychromonas

Protein attributes

Sequence length	257 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate By similarity. SAAS SAAS011343
Catalytic activity	2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. SAAS SAAS011343
Pathway	Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 2/2. SAAS SAAS011343

Ontologies

Keywords
Ligand	Schiff base SAAS SAAS011343
Molecular function	Lyase SAAS SAAS011343 EMBL ABM04567.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	deoxyribonucleotide catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	deoxyribose-phosphate aldolase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A1SYK2 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: AE527EFADC248FDC	FASTA	257	27,435
	10 20 30 40 50 60 MRDLQQASRL AIQLMDLTTL NDDDNDQKVI QLCKAAHTIA GDTAAVCIYP RFIPIARKTL 70 80 90 100 110 120 TLQNTPQIKI ATVTNFPHGN DDLNIALAET RAAVAYGADE VDLVFPYRAL IEGNAEIGTT 130 140 150 160 170 180 MVKACKDICG DNVTLKVIIE SGELKTPELI KAASEICINA GADFIKTSTG KVPVNATLEA 190 200 210 220 230 240 TKIMLEAIKE SGLNVGFKAA GGVKDAQTAD DYMQLASSIM GDNWVDRTHF RFGASSLLGA 250 LLSALNLADK ATETGGY

References

[1]

"Complete sequence of Psychromonas ingrahamii 37." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Han C., Tapia R., Schmutz J., Larimer F. , Land M., Hauser L., Kyrpides N., Ivanova N., Staley J., Richardson P. Submitted (JAN-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 37.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000510 Genomic DNA. Translation: ABM04567.1.
RefSeq	YP_944166.1. NC_008709.1.
3D structure databases
ProteinModelPortal	A1SYK2.
SMR	A1SYK2. Positions 1-233.
ModBase	Search...
Protein-protein interaction databases
STRING	A1SYK2.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4625644.
GenomeReviews	Gene locus Ping_2862 in contig CP000510_GR.
KEGG	pin:Ping_2862.
PATRIC	23071159. VBIPsyIng103130_3162.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0274.
HOGENOM	HBG636421.
OMA	FELVKQC.
PhylomeDB	A1SYK2.
ProtClustDB	PRK05283.
Enzyme and pathway databases
BioCyc	PING357804:PING_2862-MONOMER.
Family and domain databases
InterPro	IPR013785. Aldolase_TIM. IPR011343. DeoC. IPR002915. DeoC/AroFGH_arch. [Graphical view]
Gene3D	G3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KO	K01619.
PANTHER	PTHR10889. DeoC. 1 hit.
Pfam	PF01791. DeoC. 1 hit. [Graphical view]
PIRSF	PIRSF001357. DeoC. 1 hit.
TIGRFAMs	TIGR00126. DeoC. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A1SYK2_PSYIN

Accession

Primary (citable) accession number: A1SYK2

Entry history

Integrated into UniProtKB/TrEMBL:	February 6, 2007
Last sequence update:	February 6, 2007
Last modified:	December 14, 2011
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)