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Protein

Ribosomal RNA small subunit methyltransferase F

Gene

rsmF

Organism
Psychromonas ingrahamii (strain 37)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.UniRule annotation

Catalytic activityi

S-adenosyl-L-methionine + cytosine(1407) in 16S rRNA = S-adenosyl-L-homocysteine + 5-methylcytosine(1407) in 16S rRNA.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei149S-adenosyl-L-methionineUniRule annotation1
Binding sitei176S-adenosyl-L-methionineUniRule annotation1
Binding sitei194S-adenosyl-L-methionineUniRule annotation1
Active sitei247NucleophileUniRule annotation1

GO - Molecular functioni

Keywordsi

Molecular functionMethyltransferase, RNA-binding, Transferase
Biological processrRNA processing
LigandS-adenosyl-L-methionine

Enzyme and pathway databases

BioCyciPING357804:G1G7R-2332-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA small subunit methyltransferase FUniRule annotation (EC:2.1.1.178UniRule annotation)
Alternative name(s):
16S rRNA m5C1407 methyltransferaseUniRule annotation
rRNA (cytosine-C(5)-)-methyltransferase RsmFUniRule annotation
Gene namesi
Name:rsmFUniRule annotation
Ordered Locus Names:Ping_2224
OrganismiPsychromonas ingrahamii (strain 37)
Taxonomic identifieri357804 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesPsychromonadaceaePsychromonas
Proteomesi
  • UP000000639 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002850041 – 481Ribosomal RNA small subunit methyltransferase FAdd BLAST481

Interactioni

Protein-protein interaction databases

STRINGi357804.Ping_2224.

Structurei

3D structure databases

ProteinModelPortaliA1SWV0.
SMRiA1SWV0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni125 – 131S-adenosyl-L-methionine bindingUniRule annotation7

Sequence similaritiesi

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
COG3270. LUCA.
HOGENOMiHOG000218115.
KOiK11392.
OMAiDPLFHAG.
OrthoDBiPOG091H02E2.

Family and domain databases

HAMAPiMF_01579. 16SrRNA_methyltr_F. 1 hit.
InterProiView protein in InterPro
IPR018314. Fmu/NOL1/Nop2p_CS.
IPR031341. Methyltr_RsmF_N.
IPR001678. MeTrfase_RsmB/NOP2.
IPR027391. Nol1_Nop2_Fmu_2.
IPR011023. Nop2p.
IPR023267. RCMT.
IPR023545. rRNA_ssu_MeTfrase_F.
IPR029063. SAM-dependent_MTases.
PfamiView protein in Pfam
PF01189. Methyltr_RsmB-F. 1 hit.
PF17125. Methyltr_RsmF_N. 1 hit.
PF13636. Methyltranf_PUA. 1 hit.
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00446. nop2p. 1 hit.
PROSITEiView protein in PROSITE
PS01153. NOL1_NOP2_SUN. 1 hit.
PS51686. SAM_MT_RSMB_NOP. 1 hit.

Sequencei

Sequence statusi: Complete.

A1SWV0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHSKTRLPQA FIDKMTGILP NQLKIEDFIA VCQRPLRRAI RVNTLKISVE
60 70 80 90 100
KFQIRAQEQG WVLTAIPWCA EGFWIELQEE PTPLGNSAEH LGGLCYIQEA
110 120 130 140 150
SSMLPVAALF HFFTPTTQSI VLDAAAAPGS KTTQIAAKMN NSGLIIGNEF
160 170 180 190 200
SSSRIKMLHA NIQRCGIKNV ALTHFDARVF GKWLPGTFDA ILLDAPCSGE
210 220 230 240 250
GTVRKDKYAM NNWSQSSINE IASTQQELIL SAFHALKEDG ILIYSTCTLS
260 270 280 290 300
HEENQDICFF LKDKFPEHIE FLDLETLFTD AKKTRTAEGF LHIWPQVYDS
310 320 330 340 350
EGFFVAAIKK TKACTVAPAV KRLGKFPFIR PTRQKEQALY EYFASQFAIT
360 370 380 390 400
NIKGMLYQRD QELWLFPDPI KPLIKELRFS RLGIKIAEEF GNGRKSGFKS
410 420 430 440 450
THEFVTCFGD SIDAHKLELS AEQAQEFYQG RDIRDIDAKG FKGEVLLSYR
460 470 480
GHVIGLGKSL DNRIKNSLPR ELIRDNNLFI K
Length:481
Mass (Da):54,378
Last modified:February 6, 2007 - v1
Checksum:i6AD99D838885DE8A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000510 Genomic DNA. Translation: ABM03965.1.
RefSeqiWP_011770525.1. NC_008709.1.

Genome annotation databases

EnsemblBacteriaiABM03965; ABM03965; Ping_2224.
KEGGipin:Ping_2224.

Similar proteinsi

Entry informationi

Entry nameiRSMF_PSYIN
AccessioniPrimary (citable) accession number: A1SWV0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 1, 2007
Last sequence update: February 6, 2007
Last modified: February 28, 2018
This is version 73 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome