A1SWF8 (A1SWF8_PSYIN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Choline dehydrogenase EMBL ABM03823.1
EC=1.1.99.1 EMBL ABM03823.1

Gene names

Ordered Locus Names:

Ping_2072

Organism

Psychromonas ingrahamii (strain 37) [Complete proteome] [HAMAP] EMBL ABM03823.1

Taxonomic identifier

357804 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Psychromonadaceae › Psychromonas

Protein attributes

Sequence length	562 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine By similarity. SAAS SAAS007867
Catalytic activity	Choline + acceptor = betaine aldehyde + reduced acceptor. SAAS SAAS007867
Cofactor	FAD By similarity. SAAS SAAS007867
Pathway	Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine aldehyde from choline (cytochrome c reductase route): step 1/1. SAAS SAAS007867

Ontologies

Keywords
Ligand	FAD SAAS SAAS011533 Flavoprotein SAAS SAAS011533
Molecular function	Oxidoreductase SAAS SAAS007867 EMBL ABM03823.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycine betaine biosynthetic process from choline Inferred from electronic annotation. Source: InterPro
Molecular function	choline dehydrogenase activity Inferred from electronic annotation. Source: EC flavin adenine dinucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A1SWF8 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: E0CC2924C766FB4F	FASTA	562	62,142
	10 20 30 40 50 60 MTKTEYDYII VGAGSAGCVL ANRLSEDPEN QILLLETGGS DKSIFIQMPT ALSIPMNSKK 70 80 90 100 110 120 YAWQFETQAE PFLDNRRMHC PRGKVLGGSS SINGMVYVRG HARDFDEWQA SGAKDWDYAH 130 140 150 160 170 180 CLPYFKKAET WSFGGNDYRG DTGPLAVNNG NNMKNPLYQA FVDAGVDAGY LATKDYNAEQ 190 200 210 220 230 240 QEGFGPMHMT VKNGVRWSTA NAYLRPAMKR NNLTVVTHAL VHKVLLEGKK AVGVRYEVKG 250 260 270 280 290 300 QLTDTRCNKE VLLCAGSIGS PHILQLSGIG EADTLAQAGI EQHHELPGVG KNLQDHLEFY 310 320 330 340 350 360 FQFKCLKPIS LNGQLGPLNK LLIGVRWILN KSGLGATNHF ESCGFIRSKN SLEWPDLQYH 370 380 390 400 410 420 FLPAAMRYDG KEAFAGHGFQ VHVGHNKPKS RGAVKIVSKD AHIAPQIQFN YLSHQDDIEA 430 440 450 460 470 480 FRACVRLTRE IINQPGLDEY RGEEIQPGLA IQSDQEIDQF VRSSVESAYH PSCSCKMGED 490 500 510 520 530 540 AMSVVNSDTK VHGIEALRVV DSSIFPTIPN GNLNSPTIMV AERAADIILG KKLLAPNVAN 550 560 VKVADDWQNS QRLQDPKRKV NA

References

[1]

"Complete sequence of Psychromonas ingrahamii 37." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Han C., Tapia R., Schmutz J., Larimer F. , Land M., Hauser L., Kyrpides N., Ivanova N., Staley J., Richardson P. Submitted (JAN-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 37.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000510 Genomic DNA. Translation: ABM03823.1.
RefSeq	YP_943422.1. NC_008709.1.
3D structure databases
ProteinModelPortal	A1SWF8.
ModBase	Search...
Protein-protein interaction databases
STRING	A1SWF8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4624675.
GenomeReviews	Gene locus Ping_2072 in contig CP000510_GR.
KEGG	pin:Ping_2072.
PATRIC	23069373. VBIPsyIng103130_2288.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2303.
HOGENOM	HBG734713.
OMA	HMTVKNG.
PhylomeDB	A1SWF8.
ProtClustDB	PRK02106.
Enzyme and pathway databases
BioCyc	PING357804:PING_2072-MONOMER.
Family and domain databases
InterPro	IPR011533. Choline_dehydrogenase. IPR012132. GMC_OxRdtase. IPR000172. GMC_OxRdtase_N. IPR007867. GMC_OxRtase_C. [Graphical view]
KO	K00108.
Pfam	PF05199. GMC_oxred_C. 1 hit. PF00732. GMC_oxred_N. 1 hit. [Graphical view]
PIRSF	PIRSF000137. Alcohol_oxidase. 1 hit.
TIGRFAMs	TIGR01810. BetA. 1 hit.
PROSITE	PS00623. GMC_OXRED_1. 1 hit. PS00624. GMC_OXRED_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A1SWF8_PSYIN

Accession

Primary (citable) accession number: A1SWF8

Entry history

Integrated into UniProtKB/TrEMBL:	February 6, 2007
Last sequence update:	February 6, 2007
Last modified:	January 25, 2012
This is version 41 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)