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A1STK8 (A1STK8_PSYIN) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Isocitrate dehydrogenase, NADP-dependent EMBL ABM02823.1
EC=1.1.1.42 EMBL ABM02823.1
Gene names
Ordered Locus Names:Ping_0983 EMBL ABM02823.1
OrganismPsychromonas ingrahamii (strain 37) [Complete proteome] [HAMAP] EMBL ABM02823.1
Taxonomic identifier357804 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Psychromonadaceae › Psychromonas ›

Protein attributes

Sequence length742 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. PIRSR PIRSR009407-3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 3535 Potential EMBL ABM02823.1
Chain36 – 742707 Potential
PRO_5000206594

Regions

Region134 – 1418Substrate binding By similarity PIRSR PIRSR009407-2

Sites

Metal binding3521Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5501Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5541Magnesium or manganese By similarity PIRSR PIRSR009407-3
Binding site1471Substrate By similarity PIRSR PIRSR009407-2
Binding site5491Substrate By similarity PIRSR PIRSR009407-2
Site2571Critical for catalysis By similarity PIRSR PIRSR009407-1
Site4221Critical for catalysis By similarity PIRSR PIRSR009407-1

Sequences

Sequence LengthMass (Da)Tools
A1STK8 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: 01A0A0DE0A6EA2AE

FASTA74280,725
        10         20         30         40         50         60 
MTDKSAKIIY TQTDEAPALA TYSLLPIVSA FTQAADITVE TRDISLAARI LATFPDNLSA 

        70         80         90        100        110        120 
EQKQADALTE LGELAQQPQA NIIKLPNVSA SVPQLHAAIK ELQSHGFDIP NYPEDPKTEA 

       130        140        150        160        170        180 
EKEAKARYAK VLGSAVNPVL REGNSDRRVA DAVKQYAQDH PHRMGAWSKE SKSHVADMSE 

       190        200        210        220        230        240 
GDFYGSEQSV VLKEADDVKI EFTSTSGAVS VLKASTPVLK DEVIDASVMS CSALRDFYET 

       250        260        270        280        290        300 
QMQDAKENNI MLSLHLKATM MKVSDPVMFG HAVTVYFKDV FAKHAVLFAE LGVDPRNGLG 

       310        320        330        340        350        360 
DVYSKIANLP AEQKEQIEAD IQEAYATGPA LAMVDSDKGI SNLHVPSDVI IDASMPAAIR 

       370        380        390        400        410        420 
TSGCMWGLDG KLHDTKAMIP DRCYSGIYQE TISFCREHGA FDPATMGNVS NVGLMAQKAE 

       430        440        450        460        470        480 
EYGSHDKTFI IKEAGSVKVI DQAGNTLMEH AVEEGDIWRM CQAKDIPIQD WVRLAVSRAR 

       490        500        510        520        530        540 
ATGQPAIFWL DEKRAHDGNL ITKVNHYLKD HDTDGLDISI LSPIDAIKIT LQRVSEGKNT 

       550        560        570        580        590        600 
ISVTGNVLRD YLTDLFPILE LGTSAKMLSI VPLLAGGGLF ETGAGGSAPK HVQQFIEEGH 

       610        620        630        640        650        660 
LRWDSIGEFL AIAVSIEDMA EKTGNKKALV LAETLHVANG KFLKEDRSPS RKVKEIDNRG 

       670        680        690        700        710        720 
SHFYLAMYWA EALAAQSKDT ELQAKFAPLA KVLTDNEEKI LAELAAAQGT PVDLGGYFHT 

       730        740 
DPVKMAAAMR PSTILNAALA TL

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References

[1]"Complete sequence of Psychromonas ingrahamii 37."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Han C., Tapia R., Schmutz J., Larimer F. expand/collapse author list , Land M., Hauser L., Kyrpides N., Ivanova N., Staley J., Richardson P.
Submitted (JAN-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 37 EMBL ABM02823.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000510 Genomic DNA. Translation: ABM02823.1.
RefSeqYP_942422.1. NC_008709.1.

3D structure databases

ProteinModelPortalA1STK8.
SMRA1STK8. Positions 5-742.
ModBaseSearch...

Protein-protein interaction databases

STRING357804.Ping_0983.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABM02823; ABM02823; Ping_0983.
GeneID4626572.
KEGGpin:Ping_0983.
PATRIC23066921. VBIPsyIng103130_1082.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2838.
HOGENOMHOG000240860.
KOK00031.
OMAFRMCQTK.
ProtClustDBCLSK867411.

Enzyme and pathway databases

BioCycPING357804:GJBJ-1046-MONOMER.

Family and domain databases

Gene3D3.40.718.10. 3 hits.
InterProIPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PfamPF03971. IDH. 1 hit.
[Graphical view]
PIRSFPIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsTIGR00178. monomer_idh. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA1STK8_PSYIN
AccessionPrimary (citable) accession number: A1STK8
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: May 1, 2013
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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