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A1SSY1

- IF1_PSYIN

UniProt

A1SSY1 - IF1_PSYIN

Protein

Translation initiation factor IF-1

Gene

infA

Organism
Psychromonas ingrahamii (strain 37)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    No specific function has so far been attributed to this initiation factor; however, it seems to stimulate more or less all the activities of the other two initiation factors, IF-2 and IF-3.UniRule annotation

    GO - Molecular functioni

    1. translation initiation factor activity Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Initiation factor

    Keywords - Biological processi

    Protein biosynthesis

    Enzyme and pathway databases

    BioCyciPING357804:GJBJ-784-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Translation initiation factor IF-1UniRule annotation
    Gene namesi
    Name:infAUniRule annotation
    Ordered Locus Names:Ping_0744
    OrganismiPsychromonas ingrahamii (strain 37)
    Taxonomic identifieri357804 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesPsychromonadaceaePsychromonas
    ProteomesiUP000000639: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 7272Translation initiation factor IF-1PRO_0000338895Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi357804.Ping_0744.

    Structurei

    3D structure databases

    ProteinModelPortaliA1SSY1.
    SMRiA1SSY1. Positions 2-72.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini1 – 7272S1-likeUniRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the IF-1 family.UniRule annotation
    Contains 1 S1-like domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0361.
    HOGENOMiHOG000221323.
    KOiK02518.
    OMAiRITFRAK.
    OrthoDBiEOG6384SC.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    HAMAPiMF_00075. IF_1.
    InterProiIPR012340. NA-bd_OB-fold.
    IPR022967. RNA-binding_domain_S1.
    IPR006196. RNA-binding_domain_S1_IF1.
    IPR004368. TIF_IF1.
    [Graphical view]
    PfamiPF01176. eIF-1a. 1 hit.
    [Graphical view]
    SMARTiSM00316. S1. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00008. infA. 1 hit.
    PROSITEiPS50832. S1_IF1_TYPE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A1SSY1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAKEDSIEMQ GTIIDTLPNT MFRVELENGH IVTAHISGKM RKNYIRILTG   50
    DKVTVQLTPY DLSKGRIVFR AR 72
    Length:72
    Mass (Da):8,220
    Last modified:February 6, 2007 - v1
    Checksum:iD724951CB9DE1AA8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000510 Genomic DNA. Translation: ABM02596.1.
    RefSeqiWP_011769155.1. NC_008709.1.
    YP_942195.1. NC_008709.1.

    Genome annotation databases

    EnsemblBacteriaiABM02596; ABM02596; Ping_0744.
    GeneIDi4623662.
    KEGGipin:Ping_0744.
    PATRICi23066351. VBIPsyIng103130_0818.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000510 Genomic DNA. Translation: ABM02596.1 .
    RefSeqi WP_011769155.1. NC_008709.1.
    YP_942195.1. NC_008709.1.

    3D structure databases

    ProteinModelPortali A1SSY1.
    SMRi A1SSY1. Positions 2-72.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 357804.Ping_0744.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABM02596 ; ABM02596 ; Ping_0744 .
    GeneIDi 4623662.
    KEGGi pin:Ping_0744.
    PATRICi 23066351. VBIPsyIng103130_0818.

    Phylogenomic databases

    eggNOGi COG0361.
    HOGENOMi HOG000221323.
    KOi K02518.
    OMAi RITFRAK.
    OrthoDBi EOG6384SC.

    Enzyme and pathway databases

    BioCyci PING357804:GJBJ-784-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    HAMAPi MF_00075. IF_1.
    InterProi IPR012340. NA-bd_OB-fold.
    IPR022967. RNA-binding_domain_S1.
    IPR006196. RNA-binding_domain_S1_IF1.
    IPR004368. TIF_IF1.
    [Graphical view ]
    Pfami PF01176. eIF-1a. 1 hit.
    [Graphical view ]
    SMARTi SM00316. S1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00008. infA. 1 hit.
    PROSITEi PS50832. S1_IF1_TYPE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 37.

    Entry informationi

    Entry nameiIF1_PSYIN
    AccessioniPrimary (citable) accession number: A1SSY1
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 10, 2008
    Last sequence update: February 6, 2007
    Last modified: October 1, 2014
    This is version 56 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Translation initiation factors
      List of translation initiation factor entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3