A1SNK9 (A1SNK9_NOCSJ) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
30S ribosomal protein S17 RuleBase RU003873 HAMAP MF_01345

Gene names

Name:	rpsQ HAMAP MF_01345
Ordered Locus Names:	Noca_3896

Organism

Nocardioides sp. (strain BAA-499 / JS614) [Complete proteome] [HAMAP]

Taxonomic identifier

196162 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Propionibacterineae › Nocardioidaceae › Nocardioides

Protein attributes

Sequence length	93 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal By similarity. RuleBase RU003873 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA By similarity. HAMAP MF_01345
Subunit structure	Part of the 30S ribosomal subunit By similarity. HAMAP MF_01345
Sequence similarities	Belongs to the ribosomal protein S17P family. RuleBase RU003872 HAMAP MF_01345

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding RuleBase RU003873 HAMAP MF_01345
Molecular function	Ribonucleoprotein Ribosomal protein RuleBase RU003872 HAMAP MF_01345 EMBL ABL83394.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A1SNK9 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: 422C2C7B7B27504C	FASTA	93	10,590
	10 20 30 40 50 60 MSEQAQANAA ERNARKVREG LVVSDKMDKT VVVSVEDRVK HALYGKVMRR TSKLKAHDEQ 70 80 90 NECGIGDRVL LMETRPLSAT KRWRVVEILE KAK

References

[1]

"Complete sequence of chromosome 1 of Nocardioides sp. JS614." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Han C., Tapia R., Schmutz J., Larimer F. , Land M., Hauser L., Kyrpides N., Kim E., Mattes T., Gossett J., Richardson P. Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: BAA-499 / JS614.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000509 Genomic DNA. Translation: ABL83394.1.
RefSeq	YP_925081.1. NC_008699.1.
3D structure databases
ProteinModelPortal	A1SNK9.
SMR	A1SNK9. Positions 15-92.
ModBase	Search...
Protein-protein interaction databases
STRING	A1SNK9.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4598031.
GenomeReviews	Gene locus Noca_3896 in contig CP000509_GR.
KEGG	nca:Noca_3896.
PATRIC	22749915. VBINocSp122728_4189.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0186.
HOGENOM	HBG750455.
OMA	TIRECRP.
PhylomeDB	A1SNK9.
Enzyme and pathway databases
BioCyc	NSP35761:NOCA_3896-MONOMER.
Family and domain databases
HAMAP	MF_01345_B. Ribosomal_S17_B. [Tree]
InterPro	IPR012340. NA-bd_OB-fold. IPR016027. NA-bd_OB-fold-like. IPR000266. Ribosomal_S17. IPR019984. Ribosomal_S17_bac-type. IPR019979. Ribosomal_S17_CS. [Graphical view]
Gene3D	G3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
KO	K02961.
PANTHER	PTHR10744. Ribosomal_S17. 1 hit.
Pfam	PF00366. Ribosomal_S17. 1 hit. [Graphical view]
PRINTS	PR00973. RIBOSOMALS17.
ProDom	PD001295. Ribosomal_S17. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR03635. S17_bact. 1 hit.
PROSITE	PS00056. RIBOSOMAL_S17. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A1SNK9_NOCSJ

Accession

Primary (citable) accession number: A1SNK9

Entry history

Integrated into UniProtKB/TrEMBL:	February 6, 2007
Last sequence update:	February 6, 2007
Last modified:	December 14, 2011
This is version 38 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)