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A1SNF4 (A1SNF4_NOCSJ) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Diaminopimelate epimerase HAMAP MF_00197
Short name=DAP epimerase HAMAP MF_00197
EC=5.1.1.7 HAMAP MF_00197
Gene names
Name:dapF HAMAP MF_00197
Ordered Locus Names:Noca_3841
OrganismNocardioides sp. (strain BAA-499 / JS614) [Complete proteome] [HAMAP]
Taxonomic identifier196162 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Propionibacterineae › Nocardioidaceae › Nocardioides

Protein attributes

Sequence length279 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

LL-2,6-diaminoheptanedioate = meso-diaminoheptanedioate. HAMAP MF_00197 SAAS SAAS018510

Pathway

Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1. HAMAP MF_00197 SAAS SAAS018510

Subcellular location

Cytoplasm By similarity HAMAP MF_00197 SAAS SAAS018510.

Sequence similarities

Belongs to the diaminopimelate epimerase family. HAMAP MF_00197

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site841 By similarity HAMAP MF_00197
Active site2181 By similarity HAMAP MF_00197

Sequences

Sequence LengthMass (Da)Tools
A1SNF4 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: 2205E5EBF85AF051

FASTA27929,272
        10         20         30         40         50         60 
MTTTPAPTAA DGYPFLKGHG TENDFVLLPD LDGSLHGDLS ADRVRALCDR HAGIGGDGVL 

        70         80         90        100        110        120 
RVLRTDAGWF MDYRNADGSI AEMCGNGIRV FVRHLVEEGL ADPGQPIEVD TRDGVKVLTV 

       130        140        150        160        170        180 
DGDLITADMG RPRVLGETVV GVGTVSWPAR HVDMGNPHAV AFVDSLDPHG PVGPLLDPPS 

       190        200        210        220        230        240 
RDPETFPDGA NVEFVVRRGE RHVAMRVHER GSGETRSCGT GACAVMVAAA VADGARPSGA 

       250        260        270 
DVAYRVDVPG GTLTVTWTAD DRVLLTGPAV IVARGTTVL

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References

[1]"Complete sequence of chromosome 1 of Nocardioides sp. JS614."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Han C., Tapia R., Schmutz J., Larimer F. expand/collapse author list , Land M., Hauser L., Kyrpides N., Kim E., Mattes T., Gossett J., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BAA-499 / JS614.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000509 Genomic DNA. Translation: ABL83339.1.
RefSeqYP_925026.1. NC_008699.1.

3D structure databases

ProteinModelPortalA1SNF4.
ModBaseSearch...

Protein-protein interaction databases

STRINGA1SNF4.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4595906.
GenomeReviewsGene locus Noca_3841 in contig CP000509_GR.
KEGGnca:Noca_3841.
PATRIC22749797. VBINocSp122728_4130.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0253.
HOGENOMHBG399442.
OMAFMTGPAT.
PhylomeDBA1SNF4.

Enzyme and pathway databases

BioCycNSP35761:NOCA_3841-MONOMER.

Family and domain databases

HAMAPMF_00197. DAP_epimerase.
[Tree]
InterProIPR018510. DAP_epimerase_AS.
IPR001653. DAP_epimerase_DapF.
[Graphical view]
KOK01778.
PfamPF01678. DAP_epimerase. 2 hits.
[Graphical view]
TIGRFAMsTIGR00652. DapF. 1 hit.
PROSITEPS01326. DAP_EPIMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA1SNF4_NOCSJ
AccessionPrimary (citable) accession number: A1SNF4
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: December 14, 2011
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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