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Protein
Submitted name:

Regulatory protein, LuxR

Gene

Noca_3310

Organism
Nocardioides sp. (strain BAA-499 / JS614)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciNSP196162:GH4V-3355-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Regulatory protein, LuxRImported
Gene namesi
Ordered Locus Names:Noca_3310Imported
OrganismiNocardioides sp. (strain BAA-499 / JS614)Imported
Taxonomic identifieri196162 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesPropionibacterineaeNocardioidaceaeNocardioides
ProteomesiUP000000640: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi196162.Noca_3310.

Structurei

3D structure databases

ProteinModelPortaliA1SLX7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 HTH luxR-type DNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiCOG2771.
HOGENOMiHOG000268981.
OMAiALSATEW.
OrthoDBiEOG6G4VQG.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.10.3210.10. 1 hit.
InterProiIPR003607. HD/PDEase_dom.
IPR006674. HD_domain.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00471. HDc. 1 hit.
SM00421. HTH_LUXR. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
PROSITEiPS50043. HTH_LUXR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A1SLX7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTLAELLAAY SLATDLGLGQ PMEHLLRSWR IAARLGTHVG LPDGEQAALF
60 70 80 90 100
YVAMLSWVGC VADAPEVAAT FGDDISFRSD SYDVDLGGMA AYRFFLGHAG
110 120 130 140 150
AGASATARAR VVATLLATGG RRVMRGIQAH CLITSTLAER LGLDDAVSAA
160 170 180 190 200
VRQFFARWDG QGVPPHVGGE DLSPWVRLFH VGDITEVYHR NGGVEAAVRV
210 220 230 240 250
ARERRGRQFD PALADAFCEI APEVLPALGE DDDLRGMLAD EPALRRCLSG
260 270 280 290 300
PELDEALAAL ADFTDLRSPN RAGHSSGVAE LAGSAASCLG LPAVDVAASR
310 320 330 340 350
RAGYLHDIGL HGVPSTILDK PGALSATEWE RVRVSSYYTE RVLAQPAPLA
360 370 380 390 400
RIGAIASYTN ERMDGSGYHR GASGASIPMA GRVLAAACAL RTLTEPRVGR
410 420 430 440 450
PPKSVKDAAT ELRSEVRAGR LDVDATDAVL SAAGAGGRRR VAGPAGLTQR
460 470 480 490 500
EVEVLVLIAR GVATNEVAAR LGVSRKTAAT HIERIYAKTG ACSRSTATLF
510
ALRNGLLDPL AT
Length:512
Mass (Da):53,840
Last modified:February 6, 2007 - v1
Checksum:i71966357514FE262
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000509 Genomic DNA. Translation: ABL82812.1.
RefSeqiWP_011756746.1. NC_008699.1.
YP_924499.1. NC_008699.1.

Genome annotation databases

EnsemblBacteriaiABL82812; ABL82812; Noca_3310.
GeneIDi4600202.
KEGGinca:Noca_3310.
PATRICi22748707. VBINocSp122728_3587.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000509 Genomic DNA. Translation: ABL82812.1.
RefSeqiWP_011756746.1. NC_008699.1.
YP_924499.1. NC_008699.1.

3D structure databases

ProteinModelPortaliA1SLX7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi196162.Noca_3310.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABL82812; ABL82812; Noca_3310.
GeneIDi4600202.
KEGGinca:Noca_3310.
PATRICi22748707. VBINocSp122728_3587.

Phylogenomic databases

eggNOGiCOG2771.
HOGENOMiHOG000268981.
OMAiALSATEW.
OrthoDBiEOG6G4VQG.

Enzyme and pathway databases

BioCyciNSP196162:GH4V-3355-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.10.3210.10. 1 hit.
InterProiIPR003607. HD/PDEase_dom.
IPR006674. HD_domain.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00471. HDc. 1 hit.
SM00421. HTH_LUXR. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
PROSITEiPS50043. HTH_LUXR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome 1 of Nocardioides sp. JS614."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Han C., Tapia R., Schmutz J., Larimer F.
    , Land M., Hauser L., Kyrpides N., Kim E., Mattes T., Gossett J., Richardson P.
    Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BAA-499 / JS614Imported.

Entry informationi

Entry nameiA1SLX7_NOCSJ
AccessioniPrimary (citable) accession number: A1SLX7
Entry historyi
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: March 4, 2015
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.