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A1SJX1 (A1SJX1_NOCSJ) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptide deformylase 2 HAMAP MF_00163
Short name=PDF 2 HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase 2 HAMAP MF_00163
Gene names
Name:def2 HAMAP MF_00163
Ordered Locus Names:Noca_2602
OrganismNocardioides sp. (strain BAA-499 / JS614) [Complete proteome] [HAMAP]
Taxonomic identifier196162 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Propionibacterineae › Nocardioidaceae › Nocardioides

Protein attributes

Sequence length199 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. RuleBase RU003335 HAMAP MF_00163

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1601 By similarity HAMAP MF_00163
Metal binding1171Iron By similarity HAMAP MF_00163
Metal binding1591Iron By similarity HAMAP MF_00163
Metal binding1631Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
A1SJX1 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: A55FB510726DD6AD

FASTA19921,303
        10         20         30         40         50         60 
MSSPDDQGPP HAPHGPLPEG GTARSITRWG TPVMHRAQQP VTTYDDELRA LAADMVATMY 

        70         80         90        100        110        120 
AADGVGLAAC QIGVDLAMFV FDCPDDSGVH TVGVVCNPQL TLPEGRDRQL DESEEGCLSF 

       130        140        150        160        170        180 
PGAHVECARP DQASVTGTGL DGEPVSFSGD GLLARCLQHE TDHTRGTVFG DRLSTKLRKR 

       190 
LQKAHDRAVE DYPLEWPAG

« Hide

References

[1]"Complete sequence of chromosome 1 of Nocardioides sp. JS614."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Han C., Tapia R., Schmutz J., Larimer F. expand/collapse author list , Land M., Hauser L., Kyrpides N., Kim E., Mattes T., Gossett J., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BAA-499 / JS614.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000509 Genomic DNA. Translation: ABL82106.1.
RefSeqYP_923793.1. NC_008699.1.

3D structure databases

ProteinModelPortalA1SJX1.
ModBaseSearch...

Protein-protein interaction databases

STRINGA1SJX1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4597150.
GenomeReviewsGene locus Noca_2602 in contig CP000509_GR.
KEGGnca:Noca_2602.
PATRIC22747251. VBINocSp122728_2861.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0242.
HOGENOMHBG665227.
OMAQHETDHT.
ProtClustDBCLSK765029.

Enzyme and pathway databases

BioCycNSP35761:NOCA_2602-MONOMER.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA1SJX1_NOCSJ
AccessionPrimary (citable) accession number: A1SJX1
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: December 14, 2011
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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