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A1SHN5 (A1SHN5_NOCSJ) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 47. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=5.4.99.16 EMBL ABL81320.1
Gene names
Ordered Locus Names:Noca_1808 EMBL ABL81320.1
OrganismNocardioides sp. (strain BAA-499 / JS614) [Complete proteome] [HAMAP] EMBL ABL81320.1
Taxonomic identifier196162 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesPropionibacterineaeNocardioidaceaeNocardioides

Protein attributes

Sequence length571 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionIsomerase EMBL ABL81320.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncation binding

Inferred from electronic annotation. Source: InterPro

maltose alpha-D-glucosyltransferase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A1SHN5 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: 80843BC6D3BF8E1B

FASTA57165,928
        10         20         30         40         50         60 
MTQGLTPDPP ENNPDWFKSA VFYEVLVRSF RDSNADGTGD FRGLVEQLDY LQWLGVDCLW 

        70         80         90        100        110        120 
IPPFFPSPLR DGGYDVADYT GVLPEIGTIE DFRYFLDEAH QRGLKVIIDF VMNHTSDQHP 

       130        140        150        160        170        180 
WFQASRSDPQ GPYGDFYVWS DTDELYEEAR IIFVDTEPSN WTWDPVRQQY FWHRFFSHQP 

       190        200        210        220        230        240 
DLNFDNPAVH DAMLDAIRFW LNMGLDGFRL DAVPYLYERP GTNGENLPET HEMLKKVRKV 

       250        260        270        280        290        300 
VDDEYPGRIL LCEANQWPQD VVEYFGDFAV GGDECHMAFH FPVMPRIFMA VRRESRFPIS 

       310        320        330        340        350        360 
EILEQTPAIP ENCQWGIFLR NHDELTLEMV TDEDRDYMWG EYAKDPRMKA NIGIRRRLAP 

       370        380        390        400        410        420 
LLDNDTNQME LFNALLFSLP GSPVLYYGDE IGMGDNIWLG DRDGVRTPMQ WTSDRNAGFS 

       430        440        450        460        470        480 
SANPGKLDLP LIQDPVFGYQ SVNVEAQLEN TSSLLHWMRR MIHARRNHPA FGLGTFHDLG 

       490        500        510        520        530        540 
GSNSTVLSYV REYTTEDGSE DIILCVNNLS RFPQPVELDL RRFEGRRPVE LIGGVPFPEI 

       550        560        570 
GELPYLLTLA GYGFYWFRLT APETSEEGLL L 

« Hide

References

[1]"Complete sequence of chromosome 1 of Nocardioides sp. JS614."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Han C., Tapia R., Schmutz J., Larimer F. expand/collapse author list , Land M., Hauser L., Kyrpides N., Kim E., Mattes T., Gossett J., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BAA-499 / JS614.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000509 Genomic DNA. Translation: ABL81320.1.
RefSeqYP_923007.1. NC_008699.1.

3D structure databases

ProteinModelPortalA1SHN5.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING196162.Noca_1808.

Protein family/group databases

CAZyGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABL81320; ABL81320; Noca_1808.
GeneID4597645.
KEGGnca:Noca_1808.
PATRIC22745645. VBINocSp122728_2073.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHOG000220639.
KOK05343.
OMARMKANIG.
OrthoDBEOG6RVFV2.

Enzyme and pathway databases

BioCycNSP196162:GH4V-1835-MONOMER.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 3 hits.
InterProIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR012810. TreS/a-amylase_N.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 2 hits.
TIGRFAMsTIGR02456. treS_nterm. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA1SHN5_NOCSJ
AccessionPrimary (citable) accession number: A1SHN5
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: May 14, 2014
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)