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A1SHN3 (A1SHN3_NOCSJ) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
1,4-alpha-glucan branching enzyme GlgB HAMAP MF_00685
EC=2.4.1.18 HAMAP MF_00685
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase HAMAP MF_00685
Alpha-(1->4)-glucan branching enzyme HAMAP MF_00685
Glycogen branching enzyme HAMAP MF_00685
Gene names
Name:glgB HAMAP MF_00685
Ordered Locus Names:Noca_1806
OrganismNocardioides sp. (strain BAA-499 / JS614) [Complete proteome] [HAMAP]
Taxonomic identifier196162 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Propionibacterineae › Nocardioidaceae › Nocardioides

Protein attributes

Sequence length749 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity. HAMAP MF_00685

Catalytic activity

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain. HAMAP MF_00685 SAAS SAAS006407

Pathway

Glycan biosynthesis; glycogen biosynthesis. HAMAP MF_00685 SAAS SAAS006407

Subunit structure

Monomer By similarity. HAMAP MF_00685

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. HAMAP MF_00685

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site4301Nucleophile By similarity HAMAP MF_00685
Active site4831Proton donor By similarity HAMAP MF_00685

Sequences

Sequence LengthMass (Da)Tools
A1SHN3 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: B8F256D2E8D4E8A8

FASTA74983,733
        10         20         30         40         50         60 
MSDKSTPRTT SEPAPASGPA LHPVSTAELH QVAHGEHGNP HGVLGPHPHD GGVTVRVLRP 

        70         80         90        100        110        120 
LASRVVVRWS DGSGTSGEAE LAHEHEGIWA GVIALPDVPD YRVAVSYGPD EHVVDDPYRF 

       130        140        150        160        170        180 
LPTLGEMDLH LINEGRHELL WTVLGARVHR YPGALGPVTG TSFAVWAPSA RAIRIKADFN 

       190        200        210        220        230        240 
SWDGREHPMR QLGTSGVWEL FVPDVGAGTS YKYTILGPDG QWREKADPMA RWAEKPADTA 

       250        260        270        280        290        300 
SRVFESGYTW NDDVWLEARA RRAPVASPMS IYEMHLGSWK KHPDGRYWSW AELAEELPAY 

       310        320        330        340        350        360 
VAGLGFTHVE LMPVMQHPFG GSWGYHVTSY FAPDARFGDP DGFRLLVDRL HQAGVGVILD 

       370        380        390        400        410        420 
WVPGHFATDE WALARFDGTP LYEDPNPQRG WHKEWGSHIF NFGRREVRNF LYANALYWLE 

       430        440        450        460        470        480 
EFHADGLRVD GVASMLYLDY AREPGEWTPN IHGGHENLEA VQFLQEMNAT VYKRVPGITT 

       490        500        510        520        530        540 
IAEESTSWPG VTRPTSADGL GFGFKWNMGW MHDTLDYLAR EPVHRAYHHG EMTFSLVYAW 

       550        560        570        580        590        600 
SENYVLPISH DEVVHGKGSL LRKMPGDRWQ QLANLRAYLG FMWAHPGKQL LFMGAELGQE 

       610        620        630        640        650        660 
SEWAESRELD WWLLDHPEHR GVQALVRDLN ATYVDSPALW ARDHEPEGFT WIDANDAGRN 

       670        680        690        700        710        720 
VFSFVRRGGD ADLVCVSNFA AVPHDDYRLG LPAAGVWDEV LNTDAETYSG SGVGNLGSVT 

       730        740 
AVEGEWSGQP AHATLVVPPL ATVWLRRRH

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References

[1]"Complete sequence of chromosome 1 of Nocardioides sp. JS614."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Han C., Tapia R., Schmutz J., Larimer F. expand/collapse author list , Land M., Hauser L., Kyrpides N., Kim E., Mattes T., Gossett J., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BAA-499 / JS614.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000509 Genomic DNA. Translation: ABL81318.1.
RefSeqYP_923005.1. NC_008699.1.

3D structure databases

ProteinModelPortalA1SHN3.
ModBaseSearch...

Protein-protein interaction databases

STRINGA1SHN3.

Protein family/group databases

CAZyCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4597643.
GenomeReviewsGene locus Noca_1806 in contig CP000509_GR.
KEGGnca:Noca_1806.
PATRIC22745641. VBINocSp122728_2071.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0296.
HOGENOMHBG287139.
OMADGTCLYE.
PhylomeDBA1SHN3.
ProtClustDBPRK05402.

Enzyme and pathway databases

BioCycNSP35761:NOCA_1806-MONOMER.

Family and domain databases

HAMAPMF_00685. GlgB.
[Tree]
InterProIPR006407. 1-4-A-glucan_branch_enz.
IPR006048. A-amylase_b_C.
IPR015902. Alpha_amylase.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
Gene3DG3DSA:2.60.40.1180. Glyco_hydro_13_b. 1 hit.
G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
G3DSA:2.60.40.10. Ig-like_fold. 2 hits.
KOK00700.
PANTHERPTHR10357. Alpha_amylase. 1 hit.
PTHR10357:SF13. PTHR10357:SF13. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFPIRSF000463. GlgB. 1 hit.
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
SSF81296. Ig_E-set. 2 hits.
TIGRFAMsTIGR01515. Branching_enzym. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA1SHN3_NOCSJ
AccessionPrimary (citable) accession number: A1SHN3
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: December 14, 2011
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info