A1SDN8 (A1SDN8_NOCSJ) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribulokinase HAMAP MF_00520 RuleBase RU003455
EC=2.7.1.16 HAMAP MF_00520 RuleBase RU003455

Gene names

Name:	araB HAMAP MF_00520
Ordered Locus Names:	Noca_0380

Organism

Nocardioides sp. (strain BAA-499 / JS614) [Complete proteome] [HAMAP]

Taxonomic identifier

196162 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Propionibacterineae › Nocardioidaceae › Nocardioides

Protein attributes

Sequence length	567 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate. HAMAP MF_00520 RuleBase RU003455 SAAS SAAS005929
Pathway	Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 2/3. HAMAP MF_00520 RuleBase RU003455 SAAS SAAS005929
Sequence similarities	Belongs to the ribulokinase family. HAMAP MF_00520 RuleBase RU003455

Ontologies

Keywords
Biological process	Arabinose catabolism HAMAP MF_00520 RuleBase RU003455 SAAS SAAS005929 Carbohydrate metabolism
Ligand	ATP-binding HAMAP MF_00520 SAAS SAAS005929 Nucleotide-binding
Molecular function	Kinase HAMAP MF_00520 RuleBase RU003455 SAAS SAAS018483 EMBL ABL79923.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	L-arabinose catabolic process Inferred from electronic annotation. Source: HAMAP
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ribulokinase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A1SDN8 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: 5D5EEBA3A79FDB2A	FASTA	567	59,502
	10 20 30 40 50 60 MVAGVVAGAV AAGSRPELVV GVDFGTLSGR AVVVRVEDGA ELGSATHEYP HGVLDRELPD 70 80 90 100 110 120 GTPLGPDWAL QVPADYVDVL RVAVPAALAA AGADAAQVIA IGTDFTACTM VPTTADGTPL 130 140 150 160 170 180 NEVEGFASEP HAYVKLWKHH AAQPQADRIN ALAAKRGEAW LPRYGGLISS EWEFAKGLQL 190 200 210 220 230 240 LEESPETYRA TAHWVEAADW IVWQLCGEYV RNACTAGYKG IFQDGTYPTR EFLAELHPDF 250 260 270 280 290 300 EGFVEDLLQP VTGQLGRPAG RLTEEAAAWT GLPAGIVVAV GNVDAHVTAP AAQSTESGQM 310 320 330 340 350 360 LAIMGTSTCH IMNGAVLREV PGMCGVVDGG ITQGLWGYEA GQSGVGDIFN WFVTNAVPAA 370 380 390 400 410 420 YAEEAAARGV DVHELLTEKA AAQAVGEHGL VALDWHSGNR SVLVDHELSG LVLGLTLTTR 430 440 450 460 470 480 PEDVYRALIE ATAFGTRTIV ETFGASGVPV TEFVAAGGLL KNQFLMQVYA DVLGMPISVI 490 500 510 520 530 540 TSEQGPALGS AIHAAVAAGA YPDVHAASAA MGGVERGAYQ PDPVRAAAYD ALYAEYRALH 550 560 DHFGRGGTEV MRRLRSIRRA THTGAQA

References

[1]

"Complete sequence of chromosome 1 of Nocardioides sp. JS614." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Han C., Tapia R., Schmutz J., Larimer F. , Land M., Hauser L., Kyrpides N., Kim E., Mattes T., Gossett J., Richardson P. Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: BAA-499 / JS614.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000509 Genomic DNA. Translation: ABL79923.1.
RefSeq	YP_921610.1. NC_008699.1.
3D structure databases
ProteinModelPortal	A1SDN8.
ModBase	Search...
Protein-protein interaction databases
STRING	A1SDN8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4597766.
GenomeReviews	Gene locus Noca_0380 in contig CP000509_GR.
KEGG	nca:Noca_0380.
PATRIC	22742761. VBINocSp122728_0647.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1069.
HOGENOM	HBG312681.
OMA	YEAGQSC.
PhylomeDB	A1SDN8.
ProtClustDB	PRK04123.
Enzyme and pathway databases
BioCyc	NSP35761:NOCA_0380-MONOMER.
Family and domain databases
HAMAP	MF_00520. Ribulokinase. [Tree]
InterPro	IPR000577. Carb_kinase_FGGY. IPR018485. Carb_kinase_FGGY_C. IPR018483. Carb_kinase_FGGY_CS. IPR018484. Carb_kinase_FGGY_N. IPR005929. L_ribulokin. [Graphical view]
KO	K00853.
PANTHER	PTHR10196. FGGY_kin. 1 hit.
Pfam	PF02782. FGGY_C. 1 hit. PF00370. FGGY_N. 1 hit. [Graphical view]
TIGRFAMs	TIGR01234. L-ribulokinase. 1 hit.
PROSITE	PS00445. FGGY_KINASES_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A1SDN8_NOCSJ

Accession

Primary (citable) accession number: A1SDN8

Entry history

Integrated into UniProtKB/TrEMBL:	February 6, 2007
Last sequence update:	February 6, 2007
Last modified:	December 14, 2011
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)