A1SDC9 (A1SDC9_NOCSJ) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Isoamylase EMBL ABL79814.1

Gene names

Ordered Locus Names:

Noca_0269

Organism

Nocardioides sp. (strain BAA-499 / JS614) [Complete proteome] [HAMAP]

Taxonomic identifier

196162 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Propionibacterineae › Nocardioidaceae › Nocardioides

Protein attributes

Sequence length	733 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Glycosidase SAAS SAAS004193 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycogen catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	cation binding Inferred from electronic annotation. Source: InterPro glycogen debranching enzyme activity Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A1SDC9 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: 55A27FD4405B50B2	FASTA	733	82,247
	10 20 30 40 50 60 MQVWPGRAYP LGATFDGSGT NFALFSEVAD RVELCLFDAE GSEGYRETRV ELTEVDAYVW 70 80 90 100 110 120 HCYLPAVQPG QRYGYRVHGP WDPENGQRCN PNKLLLDPYA KATSGEIDWD QSLFSYNFGD 130 140 150 160 170 180 PEDSDARNDE DSAPHMTHGV VINPFFDWEG DRRLDYDYNE SIIYEAHVKG LTQLHPDIPE 190 200 210 220 230 240 ELRGTYAALG HPAITEHLTK LGVTAIELMP VHQFIQDSTL LDKGLRNYWG YNTLGFFAPH 250 260 270 280 290 300 ADYAATGQPG QQVQEFKSMV KAMHAAGIEV ILDVVYNHTA EGNHLGPTLS FKGIDNAAYY 310 320 330 340 350 360 RLVEDDQRYY MDYTGTGNSL NVRHPHSLQL LMDSLRYWVT EMHVDGFRFD LASTLAREFY 370 380 390 400 410 420 DVDRLSTFFE LVQQDPVVSQ VKLIAEPWDI GPGGYQVGGF PPQWTEWNGK YRDTVRDFWR 430 440 450 460 470 480 GEPSLGEFAS RLAGSADLYE HSGRRPVASI NFVTAHDGFT LRDLVSYDEK HNEANGEDNN 490 500 510 520 530 540 DGESHNRSWN HGVEGPTDDP EILEFRAREQ RNFIATLLLS QGVPMLLHGD EMGRTQQGNN 550 560 570 580 590 600 NTYAQDSELS WVHWDEADKP LVEFTAALSR LRRAHPTFRR KRFFTGGTVR VPDGGDGDRL 610 620 630 640 650 660 NDIVWLHLDG RPMEDNDWTQ SDSGAGAQAL GMYLNGHGIA GRDERGGPIV DNHFLLYFNA 670 680 690 700 710 720 DGPAEVTLPP DEYADAWDVV VDTGGLVDDQ TALAAGSTCS MASRSLIVLR EHREPEAEVD 730 HSVAASVAQA RRG

References

[1]

"Complete sequence of chromosome 1 of Nocardioides sp. JS614." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Han C., Tapia R., Schmutz J., Larimer F. , Land M., Hauser L., Kyrpides N., Kim E., Mattes T., Gossett J., Richardson P. Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: BAA-499 / JS614.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000509 Genomic DNA. Translation: ABL79814.1.
RefSeq	YP_921501.1. NC_008699.1.
3D structure databases
ProteinModelPortal	A1SDC9.
ModBase	Search...
Protein-protein interaction databases
STRING	A1SDC9.
Protein family/group databases
CAZy	CBM48. Carbohydrate-Binding Module Family 48. GH13. Glycoside Hydrolase Family 13.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4596153.
GenomeReviews	Gene locus Noca_0269 in contig CP000509_GR.
KEGG	nca:Noca_0269.
PATRIC	22742523. VBINocSp122728_0531.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1523.
HOGENOM	HBG350946.
OMA	QPLVEFT.
PhylomeDB	A1SDC9.
ProtClustDB	CLSK849610.
Enzyme and pathway databases
BioCyc	NSP35761:NOCA_0269-MONOMER.
Family and domain databases
InterPro	IPR015902. Alpha_amylase. IPR013780. Glyco_hydro_13_b. IPR006047. Glyco_hydro_13_cat_dom. IPR004193. Glyco_hydro_13_N. IPR013781. Glyco_hydro_subgr_catalytic. IPR011837. Glycogen_debranch_debranch. IPR017853. Glycoside_hydrolase_SF. IPR013783. Ig-like_fold. IPR014756. Ig_E-set. [Graphical view]
Gene3D	G3DSA:2.60.40.1180. Glyco_hydro_13_b. 1 hit. G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit. G3DSA:2.60.40.10. Ig-like_fold. 1 hit.
KO	K02438.
PANTHER	PTHR10357. Alpha_amylase. 1 hit. PTHR10357:SF74. PTHR10357:SF74. 1 hit.
Pfam	PF00128. Alpha-amylase. 1 hit. PF02922. CBM_48. 1 hit. [Graphical view]
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit. SSF81296. Ig_E-set. 1 hit.
TIGRFAMs	TIGR02100. GlgX_debranch. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A1SDC9_NOCSJ

Accession

Primary (citable) accession number: A1SDC9

Entry history

Integrated into UniProtKB/TrEMBL:	February 6, 2007
Last sequence update:	February 6, 2007
Last modified:	December 14, 2011
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)