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A1S8V7

- A1S8V7_SHEAM

UniProt

A1S8V7 - A1S8V7_SHEAM

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Protein
Submitted name: RNA polymerase, sigma-24 subunit, ECF subfamily
Gene
Sama_2611
Organism
Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. sigma factor activity Source: UniProtKB-KW

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Sigma factorSAAS annotations

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingSAAS annotations

Enzyme and pathway databases

BioCyciSAMA326297:GH0T-2726-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase, sigma-24 subunit, ECF subfamilyImported
Gene namesi
Ordered Locus Names:Sama_2611Imported
OrganismiShewanella amazonensis (strain ATCC BAA-1098 / SB2B)Imported
Taxonomic identifieri326297 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000009175: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi326297.Sama_2611.

Structurei

3D structure databases

ProteinModelPortaliA1S8V7.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1595.
HOGENOMiHOG000094755.
KOiK03088.
OMAiYRHEEIA.
OrthoDBiEOG6ZD6DW.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.

Sequencei

Sequence statusi: Complete.

A1S8V7-1 [UniParc]FASTAAdd to Basket

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MEPKVLPIPQ QQSQDVNDAS LAQQAAQGDK SAFEALYQRH HKRIYALALR    50
LGGEPSLADE ILQESFVRLW HKLPQFRGES QFGTWFYSLA LNQALSTLKQ 100
HRSFWARMVP DWQIQDAPEH SQNDDGLLLD RLIVRLPERA RLVFVLFAVE 150
GFSHEEVASL LGISTGTSKA HYHRARELMK EMLS 184
Length:184
Mass (Da):21,077
Last modified:February 6, 2007 - v1
Checksum:iBEE321EFB059CE0F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000507 Genomic DNA. Translation: ABM00814.1.
RefSeqiYP_928483.1. NC_008700.1.

Genome annotation databases

EnsemblBacteriaiABM00814; ABM00814; Sama_2611.
GeneIDi4604858.
KEGGisaz:Sama_2611.
PATRICi23454067. VBISheAma74963_2685.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000507 Genomic DNA. Translation: ABM00814.1 .
RefSeqi YP_928483.1. NC_008700.1.

3D structure databases

ProteinModelPortali A1S8V7.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 326297.Sama_2611.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABM00814 ; ABM00814 ; Sama_2611 .
GeneIDi 4604858.
KEGGi saz:Sama_2611.
PATRICi 23454067. VBISheAma74963_2685.

Phylogenomic databases

eggNOGi COG1595.
HOGENOMi HOG000094755.
KOi K03088.
OMAi YRHEEIA.
OrthoDBi EOG6ZD6DW.

Enzyme and pathway databases

BioCyci SAMA326297:GH0T-2726-MONOMER.

Family and domain databases

Gene3Di 1.10.10.10. 1 hit.
InterProi IPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view ]
SUPFAMi SSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsi TIGR02937. sigma70-ECF. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-1098 / SB2B.

Entry informationi

Entry nameiA1S8V7_SHEAM
AccessioniPrimary (citable) accession number: A1S8V7
Entry historyi
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: May 14, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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