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A1S8V7

- A1S8V7_SHEAM

UniProt

A1S8V7 - A1S8V7_SHEAM

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Protein
Submitted name:

RNA polymerase, sigma-24 subunit, ECF subfamily

Gene

Sama_2611

Organism
Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. sigma factor activity Source: UniProtKB-KW

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Sigma factorSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingSAAS annotation

Enzyme and pathway databases

BioCyciSAMA326297:GH0T-2726-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase, sigma-24 subunit, ECF subfamilyImported
Gene namesi
Ordered Locus Names:Sama_2611Imported
OrganismiShewanella amazonensis (strain ATCC BAA-1098 / SB2B)Imported
Taxonomic identifieri326297 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000009175: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi326297.Sama_2611.

Structurei

3D structure databases

ProteinModelPortaliA1S8V7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1595.
HOGENOMiHOG000094755.
KOiK03088.
OMAiYRHEEIA.
OrthoDBiEOG6ZD6DW.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.

Sequencei

Sequence statusi: Complete.

A1S8V7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MEPKVLPIPQ QQSQDVNDAS LAQQAAQGDK SAFEALYQRH HKRIYALALR
60 70 80 90 100
LGGEPSLADE ILQESFVRLW HKLPQFRGES QFGTWFYSLA LNQALSTLKQ
110 120 130 140 150
HRSFWARMVP DWQIQDAPEH SQNDDGLLLD RLIVRLPERA RLVFVLFAVE
160 170 180
GFSHEEVASL LGISTGTSKA HYHRARELMK EMLS
Length:184
Mass (Da):21,077
Last modified:February 6, 2007 - v1
Checksum:iBEE321EFB059CE0F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000507 Genomic DNA. Translation: ABM00814.1.
RefSeqiYP_928483.1. NC_008700.1.

Genome annotation databases

EnsemblBacteriaiABM00814; ABM00814; Sama_2611.
GeneIDi4604858.
KEGGisaz:Sama_2611.
PATRICi23454067. VBISheAma74963_2685.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000507 Genomic DNA. Translation: ABM00814.1 .
RefSeqi YP_928483.1. NC_008700.1.

3D structure databases

ProteinModelPortali A1S8V7.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 326297.Sama_2611.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABM00814 ; ABM00814 ; Sama_2611 .
GeneIDi 4604858.
KEGGi saz:Sama_2611.
PATRICi 23454067. VBISheAma74963_2685.

Phylogenomic databases

eggNOGi COG1595.
HOGENOMi HOG000094755.
KOi K03088.
OMAi YRHEEIA.
OrthoDBi EOG6ZD6DW.

Enzyme and pathway databases

BioCyci SAMA326297:GH0T-2726-MONOMER.

Family and domain databases

Gene3Di 1.10.10.10. 1 hit.
InterProi IPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view ]
SUPFAMi SSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsi TIGR02937. sigma70-ECF. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-1098 / SB2BImported.

Entry informationi

Entry nameiA1S8V7_SHEAM
AccessioniPrimary (citable) accession number: A1S8V7
Entry historyi
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: October 1, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3