A1S8V7 (A1S8V7_SHEAM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
RNA polymerase, sigma-24 subunit, ECF subfamily EMBL ABM00814.1

Gene names

Ordered Locus Names:

Sama_2611

Organism

Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) [Complete proteome] [HAMAP] EMBL ABM00814.1

Taxonomic identifier

326297 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella › Shewanella amazonensis

Protein attributes

Sequence length	184 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding SAAS SAAS007627
Molecular function	Sigma factor SAAS SAAS007627
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A1S8V7 [UniParc]. Last modified February 6, 2007. Version 1. Checksum: BEE321EFB059CE0F	FASTA	184	21,077
	10 20 30 40 50 60 MEPKVLPIPQ QQSQDVNDAS LAQQAAQGDK SAFEALYQRH HKRIYALALR LGGEPSLADE 70 80 90 100 110 120 ILQESFVRLW HKLPQFRGES QFGTWFYSLA LNQALSTLKQ HRSFWARMVP DWQIQDAPEH 130 140 150 160 170 180 SQNDDGLLLD RLIVRLPERA RLVFVLFAVE GFSHEEVASL LGISTGTSKA HYHRARELMK EMLS

References

[1]

"Complete sequence of Shewanella amazonensis SB2B." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Fredrickson J., Richardson P. Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-1098 / SB2B.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000507 Genomic DNA. Translation: ABM00814.1.
RefSeq	YP_928483.1. NC_008700.1.
3D structure databases
ProteinModelPortal	A1S8V7.
ModBase	Search...
Protein-protein interaction databases
STRING	326297.Sama_2611.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABM00814; ABM00814; Sama_2611.
GeneID	4604858.
KEGG	saz:Sama_2611.
PATRIC	23454067. VBISheAma74963_2685.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1595.
HOGENOM	HOG000094755.
KO	K03088.
OMA	VATNICL.
ProtClustDB	CLSK907369.
Enzyme and pathway databases
BioCyc	SAMA326297:GH0T-2741-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR014284. RNA_pol_sigma-70_dom. IPR007627. RNA_pol_sigma70_r2. IPR013249. RNA_pol_sigma70_r4_t2. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF04542. Sigma70_r2. 1 hit. PF08281. Sigma70_r4_2. 1 hit. [Graphical view]
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 1 hit.
TIGRFAMs	TIGR02937. sigma70-ECF. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A1S8V7_SHEAM

Accession

Primary (citable) accession number: A1S8V7

Entry history

Integrated into UniProtKB/TrEMBL:	February 6, 2007
Last sequence update:	February 6, 2007
Last modified:	May 1, 2013
This is version 47 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)