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A1S8V7

- A1S8V7_SHEAM

UniProt

A1S8V7 - A1S8V7_SHEAM

Protein
Submitted name:

RNA polymerase, sigma-24 subunit, ECF subfamily

Gene

Sama_2611

Organism
Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 53 (01 Oct 2014)
      Sequence version 1 (06 Feb 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. sequence-specific DNA binding transcription factor activity Source: InterPro
    3. sigma factor activity Source: UniProtKB-KW

    GO - Biological processi

    1. DNA-templated transcription, initiation Source: InterPro

    Keywords - Molecular functioni

    Sigma factorSAAS annotation

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-bindingSAAS annotation

    Enzyme and pathway databases

    BioCyciSAMA326297:GH0T-2726-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    RNA polymerase, sigma-24 subunit, ECF subfamilyImported
    Gene namesi
    Ordered Locus Names:Sama_2611Imported
    OrganismiShewanella amazonensis (strain ATCC BAA-1098 / SB2B)Imported
    Taxonomic identifieri326297 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
    ProteomesiUP000009175: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi326297.Sama_2611.

    Structurei

    3D structure databases

    ProteinModelPortaliA1S8V7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1595.
    HOGENOMiHOG000094755.
    KOiK03088.
    OMAiYRHEEIA.
    OrthoDBiEOG6ZD6DW.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    InterProiIPR014284. RNA_pol_sigma-70_dom.
    IPR007627. RNA_pol_sigma70_r2.
    IPR013249. RNA_pol_sigma70_r4_t2.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF04542. Sigma70_r2. 1 hit.
    PF08281. Sigma70_r4_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF88659. SSF88659. 1 hit.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A1S8V7-1 [UniParc]FASTAAdd to Basket

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    MEPKVLPIPQ QQSQDVNDAS LAQQAAQGDK SAFEALYQRH HKRIYALALR    50
    LGGEPSLADE ILQESFVRLW HKLPQFRGES QFGTWFYSLA LNQALSTLKQ 100
    HRSFWARMVP DWQIQDAPEH SQNDDGLLLD RLIVRLPERA RLVFVLFAVE 150
    GFSHEEVASL LGISTGTSKA HYHRARELMK EMLS 184
    Length:184
    Mass (Da):21,077
    Last modified:February 6, 2007 - v1
    Checksum:iBEE321EFB059CE0F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000507 Genomic DNA. Translation: ABM00814.1.
    RefSeqiYP_928483.1. NC_008700.1.

    Genome annotation databases

    EnsemblBacteriaiABM00814; ABM00814; Sama_2611.
    GeneIDi4604858.
    KEGGisaz:Sama_2611.
    PATRICi23454067. VBISheAma74963_2685.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000507 Genomic DNA. Translation: ABM00814.1 .
    RefSeqi YP_928483.1. NC_008700.1.

    3D structure databases

    ProteinModelPortali A1S8V7.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 326297.Sama_2611.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABM00814 ; ABM00814 ; Sama_2611 .
    GeneIDi 4604858.
    KEGGi saz:Sama_2611.
    PATRICi 23454067. VBISheAma74963_2685.

    Phylogenomic databases

    eggNOGi COG1595.
    HOGENOMi HOG000094755.
    KOi K03088.
    OMAi YRHEEIA.
    OrthoDBi EOG6ZD6DW.

    Enzyme and pathway databases

    BioCyci SAMA326297:GH0T-2726-MONOMER.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    InterProi IPR014284. RNA_pol_sigma-70_dom.
    IPR007627. RNA_pol_sigma70_r2.
    IPR013249. RNA_pol_sigma70_r4_t2.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF04542. Sigma70_r2. 1 hit.
    PF08281. Sigma70_r4_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF88659. SSF88659. 1 hit.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsi TIGR02937. sigma70-ECF. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC BAA-1098 / SB2BImported.

    Entry informationi

    Entry nameiA1S8V7_SHEAM
    AccessioniPrimary (citable) accession number: A1S8V7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 6, 2007
    Last sequence update: February 6, 2007
    Last modified: October 1, 2014
    This is version 53 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3