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Protein
Submitted name:

RNA polymerase, sigma-24 subunit, ECF subfamily

Gene

Sama_2611

Organism
Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Sigma factorSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingSAAS annotation

Enzyme and pathway databases

BioCyciSAMA326297:GH0T-2726-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase, sigma-24 subunit, ECF subfamilyImported
Gene namesi
Ordered Locus Names:Sama_2611Imported
OrganismiShewanella amazonensis (strain ATCC BAA-1098 / SB2B)Imported
Taxonomic identifieri326297 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
Proteomesi
  • UP000009175 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi326297.Sama_2611.

Structurei

3D structure databases

ProteinModelPortaliA1S8V7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini36 – 10368Sigma70_r2InterPro annotationAdd
BLAST
Domaini128 – 17851Sigma70_r4_2InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the sigma-70 factor family. ECF subfamily.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105GN3. Bacteria.
COG1595. LUCA.
HOGENOMiHOG000094755.
KOiK03088.
OMAiPEKHRTI.
OrthoDBiPOG091H04ZH.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.

Sequencei

Sequence statusi: Complete.

A1S8V7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEPKVLPIPQ QQSQDVNDAS LAQQAAQGDK SAFEALYQRH HKRIYALALR
60 70 80 90 100
LGGEPSLADE ILQESFVRLW HKLPQFRGES QFGTWFYSLA LNQALSTLKQ
110 120 130 140 150
HRSFWARMVP DWQIQDAPEH SQNDDGLLLD RLIVRLPERA RLVFVLFAVE
160 170 180
GFSHEEVASL LGISTGTSKA HYHRARELMK EMLS
Length:184
Mass (Da):21,077
Last modified:February 6, 2007 - v1
Checksum:iBEE321EFB059CE0F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000507 Genomic DNA. Translation: ABM00814.1.
RefSeqiWP_011760719.1. NC_008700.1.

Genome annotation databases

EnsemblBacteriaiABM00814; ABM00814; Sama_2611.
KEGGisaz:Sama_2611.
PATRICi23454067. VBISheAma74963_2685.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000507 Genomic DNA. Translation: ABM00814.1.
RefSeqiWP_011760719.1. NC_008700.1.

3D structure databases

ProteinModelPortaliA1S8V7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi326297.Sama_2611.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABM00814; ABM00814; Sama_2611.
KEGGisaz:Sama_2611.
PATRICi23454067. VBISheAma74963_2685.

Phylogenomic databases

eggNOGiENOG4105GN3. Bacteria.
COG1595. LUCA.
HOGENOMiHOG000094755.
KOiK03088.
OMAiPEKHRTI.
OrthoDBiPOG091H04ZH.

Enzyme and pathway databases

BioCyciSAMA326297:GH0T-2726-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiA1S8V7_SHEAM
AccessioniPrimary (citable) accession number: A1S8V7
Entry historyi
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: September 7, 2016
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.