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Protein
Submitted name:

RNA polymerase, sigma-24 subunit, ECF subfamily

Gene

Sama_2611

Organism
Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingSAAS annotation, Sigma factorSAAS annotation
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciSAMA326297:G1G7Q-2753-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase, sigma-24 subunit, ECF subfamilyImported
Gene namesi
Ordered Locus Names:Sama_2611Imported
OrganismiShewanella amazonensis (strain ATCC BAA-1098 / SB2B)Imported
Taxonomic identifieri326297 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
Proteomesi
  • UP000009175 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi326297.Sama_2611

Structurei

3D structure databases

ProteinModelPortaliA1S8V7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini36 – 103Sigma70_r2InterPro annotationAdd BLAST68
Domaini128 – 178Sigma70_r4_2InterPro annotationAdd BLAST51

Sequence similaritiesi

Belongs to the sigma-70 factor family. ECF subfamily.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105GN3 Bacteria
COG1595 LUCA
HOGENOMiHOG000094755
KOiK03088
OMAiAVTTWLH
OrthoDBiPOG091H04ZH

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR014284 RNA_pol_sigma-70_dom
IPR007627 RNA_pol_sigma70_r2
IPR013249 RNA_pol_sigma70_r4_t2
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR036388 WH-like_DNA-bd_sf
PfamiView protein in Pfam
PF04542 Sigma70_r2, 1 hit
PF08281 Sigma70_r4_2, 1 hit
SUPFAMiSSF88659 SSF88659, 1 hit
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02937 sigma70-ECF, 1 hit

Sequencei

Sequence statusi: Complete.

A1S8V7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEPKVLPIPQ QQSQDVNDAS LAQQAAQGDK SAFEALYQRH HKRIYALALR
60 70 80 90 100
LGGEPSLADE ILQESFVRLW HKLPQFRGES QFGTWFYSLA LNQALSTLKQ
110 120 130 140 150
HRSFWARMVP DWQIQDAPEH SQNDDGLLLD RLIVRLPERA RLVFVLFAVE
160 170 180
GFSHEEVASL LGISTGTSKA HYHRARELMK EMLS
Length:184
Mass (Da):21,077
Last modified:February 6, 2007 - v1
Checksum:iBEE321EFB059CE0F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000507 Genomic DNA Translation: ABM00814.1
RefSeqiWP_011760719.1, NC_008700.1

Genome annotation databases

EnsemblBacteriaiABM00814; ABM00814; Sama_2611
KEGGisaz:Sama_2611

Similar proteinsi

Entry informationi

Entry nameiA1S8V7_SHEAM
AccessioniPrimary (citable) accession number: A1S8V7
Entry historyiIntegrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: April 25, 2018
This is version 75 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health