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Protein
Submitted name:

dTDP-4-dehydrorhamnose reductase

Gene

Sama_2239

Organism
Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. dTDP-4-dehydrorhamnose reductase activity Source: UniProtKB-EC

GO - Biological processi

  1. extracellular polysaccharide biosynthetic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseImported

Enzyme and pathway databases

BioCyciSAMA326297:GH0T-2336-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
dTDP-4-dehydrorhamnose reductaseImported (EC:1.1.1.133Imported)
Gene namesi
Ordered Locus Names:Sama_2239Imported
OrganismiShewanella amazonensis (strain ATCC BAA-1098 / SB2B)Imported
Taxonomic identifieri326297 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000009175 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi326297.Sama_2239.

Structurei

3D structure databases

ProteinModelPortaliA1S7T8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1091.
HOGENOMiHOG000227712.
KOiK00067.
OMAiWSRLIAE.
OrthoDBiEOG6HTP2V.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR005913. dTDP_dehydrorham_reduct.
IPR016040. NAD(P)-bd_dom.
IPR029900. RmlD.
IPR029903. RmlD-like-bd.
[Graphical view]
PANTHERiPTHR10491. PTHR10491. 1 hit.
PTHR10491:SF5. PTHR10491:SF5. 1 hit.
PfamiPF04321. RmlD_sub_bind. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01214. rmlD. 1 hit.

Sequencei

Sequence statusi: Complete.

A1S7T8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRVLLLGSSG QVGRALLAFK PAGYKLLVPG RSEVDYLQPE SITDYVLFHK
60 70 80 90 100
PQLVINCAAY TAVDKAEAET ALCTRINSGA CEHLAKAAAA ADAVLLHLST
110 120 130 140 150
DYVFDGLLDR PYNEEDSPAP LSVYGHSKWL GEQTIVANCA KHLIVRTSWI
160 170 180 190 200
FDADSNNFVN TMLRLAASRS ELRVVADQVG GPTPASELAR AIWQLARQSV
210 220 230 240 250
ERNGPWGVYH FSGQPFVSWY EFARSILTEA YRLCVIHQLP TITSISASEF
260 270 280 290 300
GSPAQRPANS RLDGSKIKAL YGVAAADWQS ELVNILKAKA RAVTSVTNPG

C
Length:301
Mass (Da):32,736
Last modified:February 6, 2007 - v1
Checksum:i6B73CED884A7350B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000507 Genomic DNA. Translation: ABM00445.1.
RefSeqiYP_928114.1. NC_008700.1.

Genome annotation databases

EnsemblBacteriaiABM00445; ABM00445; Sama_2239.
KEGGisaz:Sama_2239.
PATRICi23453283. VBISheAma74963_2310.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000507 Genomic DNA. Translation: ABM00445.1.
RefSeqiYP_928114.1. NC_008700.1.

3D structure databases

ProteinModelPortaliA1S7T8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi326297.Sama_2239.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABM00445; ABM00445; Sama_2239.
KEGGisaz:Sama_2239.
PATRICi23453283. VBISheAma74963_2310.

Phylogenomic databases

eggNOGiCOG1091.
HOGENOMiHOG000227712.
KOiK00067.
OMAiWSRLIAE.
OrthoDBiEOG6HTP2V.

Enzyme and pathway databases

BioCyciSAMA326297:GH0T-2336-MONOMER.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR005913. dTDP_dehydrorham_reduct.
IPR016040. NAD(P)-bd_dom.
IPR029900. RmlD.
IPR029903. RmlD-like-bd.
[Graphical view]
PANTHERiPTHR10491. PTHR10491. 1 hit.
PTHR10491:SF5. PTHR10491:SF5. 1 hit.
PfamiPF04321. RmlD_sub_bind. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01214. rmlD. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-1098 / SB2BImported.

Entry informationi

Entry nameiA1S7T8_SHEAM
AccessioniPrimary (citable) accession number: A1S7T8
Entry historyi
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: April 29, 2015
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.