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A1S757 (A1S757_SHEAM) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Cystathionine beta-lyase EMBL ABM00214.1
EC=4.4.1.8 EMBL ABM00214.1
Gene names
Ordered Locus Names:Sama_2008
OrganismShewanella amazonensis (strain ATCC BAA-1098 / SB2B) [Complete proteome] [HAMAP] EMBL ABM00214.1
Taxonomic identifier326297 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length401 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLyase EMBL ABM00214.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcellular amino acid metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: InterPro

   Molecular functioncystathionine beta-lyase activity

Inferred from electronic annotation. Source: EC

pyridoxal phosphate binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A1S757 [UniParc].

Last modified February 6, 2007. Version 1.
Checksum: 639D87248C7DCF55

FASTA40144,102
        10         20         30         40         50         60 
MSDKPMKTAT KIVSLGREKK YSKGVINPPV FRASTIVFDT MEEMRHAAKN KHNGEMFYGR 

        70         80         90        100        110        120 
RGTPTHFGFQ AAIAELEGGA GTALYPSGAA AISASLLAFL QAGDHLLMVD SVYEPTRDLC 

       130        140        150        160        170        180 
DKVLKGYGIE TTYYDPLIGA GIEALIRPNT RVLFVESPGS ITMEVQDVPT LARIAHEHGL 

       190        200        210        220        230        240 
VVILDNTWAS PINSRPFELG VDVSIQAATK YIVGHSDVMM GTATASPQYW DKLREHSYLL 

       250        260        270        280        290        300 
GQTTSPDDVY LAARGLRTLG VRMAQHEKNA LAVANWLKTR PEVDHLRHPA FEECPGHEFF 

       310        320        330        340        350        360 
KRDFSGSNGL FSFVLKRGTV DAVTAMVEGM SHFKMGFSWG GFESLILGVT GIHNIRSATR 

       370        380        390        400 
WDSSKPLIRV HIGLEDPEDL IEDLSAGFVR FNEVMAKETQ G

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References

[1]"Complete sequence of Shewanella amazonensis SB2B."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Fredrickson J., Richardson P.
Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-1098 / SB2B.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000507 Genomic DNA. Translation: ABM00214.1.
RefSeqYP_927883.1. NC_008700.1.

3D structure databases

ProteinModelPortalA1S757.
SMRA1S757. Positions 7-390.
ModBaseSearch...

Protein-protein interaction databases

STRINGA1S757.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4604258.
GenomeReviewsGene locus Sama_2008 in contig CP000507_GR.
KEGGsaz:Sama_2008.
NMPDRfig|326297.7.peg.1888.
PATRIC23452769. VBISheAma74963_2073.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0626.
HOGENOMHBG754729.
OMAREQSYLM.
PhylomeDBA1S757.
ProtClustDBPRK09028.

Family and domain databases

InterProIPR000277. Cys/Met-Metab_PyrdxlP-dep_enz.
IPR006233. Cys_b_lyase_bac.
IPR015424. PyrdxlP-dep_Trfase_major_dom.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
Gene3DG3DSA:3.40.640.10. PyrdxlP-dep_Trfase_major_sub1. 1 hit.
G3DSA:3.90.1150.10. PyrdxlP-dep_Trfase_major_sub2. 1 hit.
KOK01760.
PANTHERPTHR11808:SF8. Cys_b_lyase_bac. 1 hit.
PTHR11808. Cys_Met_Meta_PP. 1 hit.
PfamPF01053. Cys_Met_Meta_PP. 1 hit.
[Graphical view]
PIRSFPIRSF001434. CGS. 1 hit.
SUPFAMSSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMsTIGR01324. Cysta_beta_ly_B. 1 hit.
PROSITEPS00868. CYS_MET_METAB_PP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA1S757_SHEAM
AccessionPrimary (citable) accession number: A1S757
Entry history
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: January 25, 2012
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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