Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Regulatory inactivation of DnaA Hda protein

Gene

Sama_1916

Organism
Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei185CDPCombined sources1
Binding sitei210CDPCombined sources1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi29 – 30CDPCombined sources2
Nucleotide bindingi61 – 66CDPCombined sources6

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

DNA replicationUniRule annotation

Keywords - Ligandi

Nucleotide-bindingCombined sources

Enzyme and pathway databases

BioCyciSAMA326297:GH0T-1987-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Regulatory inactivation of DnaA Hda proteinImported
Gene namesi
Ordered Locus Names:Sama_1916Imported
OrganismiShewanella amazonensis (strain ATCC BAA-1098 / SB2B)Imported
Taxonomic identifieri326297 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
Proteomesi
  • UP000009175 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi326297.Sama_1916.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3BOSX-ray1.75A/B1-241[»]
3SC3X-ray3.00A/B18-241[»]
ProteinModelPortaliA1S6W5.
SMRiA1S6W5.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiA1S6W5.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini45 – 220Bac_DnaAInterPro annotationAdd BLAST176

Sequence similaritiesi

Belongs to the DnaA family.UniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4108KZ1. Bacteria.
COG0593. LUCA.
HOGENOMiHOG000256538.
KOiK10763.
OMAiGWGLVYQ.
OrthoDBiPOG091H0GIW.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR020591. Chromosome_initiator_DnaA-like.
IPR013317. DnaA.
IPR017788. Hda.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00308. Bac_DnaA. 1 hit.
[Graphical view]
PRINTSiPR00051. DNAA.
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR03420. DnaA_homol_Hda. 1 hit.

Sequencei

Sequence statusi: Complete.

A1S6W5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRSNRVTQHP PLQLSLPVHL PDDETFTSYY PAAGNDELIG ALKSAASGDG
60 70 80 90 100
VQAIYLWGPV KSGRTHLIHA ACARANELER RSFYIPLGIH ASISTALLEG
110 120 130 140 150
LEQFDLICID DVDAVAGHPL WEEAIFDLYN RVAEQKRGSL IVSASASPME
160 170 180 190 200
AGFVLPDLVS RMHWGLTYQL QPMMDDEKLA ALQRRAAMRG LQLPEDVGRF
210 220 230 240
LLNRMARDLR TLFDVLDRLD KASMVHQRKL TIPFVKEMLR L
Length:241
Mass (Da):27,002
Last modified:February 6, 2007 - v1
Checksum:i6E2610A6BA791C40
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000507 Genomic DNA. Translation: ABM00122.1.

Genome annotation databases

EnsemblBacteriaiABM00122; ABM00122; Sama_1916.
KEGGisaz:Sama_1916.
PATRICi23452573. VBISheAma74963_1975.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000507 Genomic DNA. Translation: ABM00122.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3BOSX-ray1.75A/B1-241[»]
3SC3X-ray3.00A/B18-241[»]
ProteinModelPortaliA1S6W5.
SMRiA1S6W5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi326297.Sama_1916.

Protocols and materials databases

DNASUi4604166.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABM00122; ABM00122; Sama_1916.
KEGGisaz:Sama_1916.
PATRICi23452573. VBISheAma74963_1975.

Phylogenomic databases

eggNOGiENOG4108KZ1. Bacteria.
COG0593. LUCA.
HOGENOMiHOG000256538.
KOiK10763.
OMAiGWGLVYQ.
OrthoDBiPOG091H0GIW.

Enzyme and pathway databases

BioCyciSAMA326297:GH0T-1987-MONOMER.

Miscellaneous databases

EvolutionaryTraceiA1S6W5.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR020591. Chromosome_initiator_DnaA-like.
IPR013317. DnaA.
IPR017788. Hda.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00308. Bac_DnaA. 1 hit.
[Graphical view]
PRINTSiPR00051. DNAA.
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR03420. DnaA_homol_Hda. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiA1S6W5_SHEAM
AccessioniPrimary (citable) accession number: A1S6W5
Entry historyi
Integrated into UniProtKB/TrEMBL: February 6, 2007
Last sequence update: February 6, 2007
Last modified: November 30, 2016
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.